environment.yml

name: BMI
channels:
  - salilab
  - defaults
  - conda-forge
dependencies:
  - ca-certificates=2020.1.1
  - certifi=2019.11.28
  - libcxx=11.1.0
  - libedit=3.1.20181209
  - libffi=3.2.1
  - ncurses=6.2
  - openssl=1.1.1k
  - pip=21.0.1
  - python=3.7.6
  - readline=7.0
  - setuptools=45.2.0
  - sqlite=3.31.1
  - tk=8.6.8
  - wheel=0.34.2
  - xz=5.2.4
  - zlib=1.2.11
  - pip:
    - arviz==0.9.0
    - cftime==1.2.1
    - cobra==0.18.1
    - cycler==0.10.0
    - depinfo==1.7.0
    - descartes==1.1.0
    - emll@git+https://github.com/pstjohn/emll.git
    - fastprogress==0.2.5
    - future==0.18.2
    - h5py==2.10.0
    - importlib-metadata==4.0.0
    - kiwisolver==1.1.0
    - matplotlib==3.1.3
    - mizani==0.7.3
    - mpmath==1.2.1
    - netcdf4==1.5.4
    - numpy==1.18.1
    - optlang==1.5.1
    - packaging==20.1
    - palettable==3.3.0
    - pandas==1.1.0
    - patsy==0.5.1
    - pillow==7.0.0
    - plotnine==0.7.1
    - pymc3==3.9.2
    - pyparsing==2.4.6
    - python-dateutil==2.8.1
    - python-libsbml-experimental==5.18.1
    - pytz==2019.3
    - ruamel-yaml==0.17.4
    - ruamel-yaml-clib==0.2.2
    - scipy==1.4.1
    - seaborn==0.10.0
    - six==1.14.0
    - statsmodels==0.12.2
    - swiglpk==5.0.3
    - sympy==1.8
    - theano==1.0.5
    - tqdm==4.42.1
    - typing-extensions==3.7.4.2
    - xarray==0.16.0
    - zipp==3.4.1
prefix: /usr/local/anaconda3/envs/BMI