Validation of ds005256 never completes

[yarikoptic]

https://openneuro.org/datasets/ds005256

I git pushed yesterday, but it is still

as of today.

[effigies]

How long does the validator take to run locally?

[effigies]

We've clocked it, and it takes 15 minutes on our end. My best guess is that the HED tags are causing a slowdown.

[yarikoptic]

details -- about 5 minutes

(deno) yoh@typhon:/mnt/DATA/data/yoh/1076_spacetop$ duct deno run --allow-read --allow-env --reload -A https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js --outfile logs/deno-bids-validator.log $PWD
2025-01-28T16:41:25-0500 [INFO    ] con-duct: duct is executing 'deno run --allow-read --allow-env --reload -A https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js --outfile logs/deno-bids-validator.log /mnt/DATA/data/yoh/1076_spacetop'...
2025-01-28T16:41:25-0500 [INFO    ] con-duct: Log files will be written to .duct/logs/2025.01.28T16.41.25-3688580_
Download https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js
Download https://raw.githubusercontent.com/bids-standard/bids-validator/deno-build/bids-validator.js
2025-01-28T16:46:17-0500 [INFO    ] con-duct: Summary:
Exit Code: 1
Command: deno run --allow-read --allow-env --reload -A https://github.com/bids-standard/bids-validator/raw/deno-build/bids-validator.js --outfile logs/deno-bids-validator.log /mnt/DATA/data/yoh/1076_spacetop
Log files location: .duct/logs/2025.01.28T16.41.25-3688580_
Wall Clock Time: 291.983 sec
Memory Peak Usage (RSS): 505.5 MB
Memory Average Usage (RSS): 438.6 MB
Virtual Memory Peak Usage (VSZ): 21.1 GB
Virtual Memory Average Usage (VSZ): 21.0 GB
Memory Peak Percentage: 0.0%
Memory Average Percentage: 0.0%
CPU Peak Usage: 164.0%
Average CPU Usage: 160.09090909090904%

(deno) yoh@typhon:/mnt/DATA/data/yoh/1076_spacetop$ grep ERROR logs/deno-bids-validator.log
        [ERROR] PARTICIPANT_ID_MISMATCH Participant labels found in this dataset did not match the values in participant_id column
        [ERROR] HED_ERROR The validation on this HED string returned an error.
                /task-social_events.json - ERROR: [TAG_EXTENSION_INVALID] "Categorical-value" appears as "Property/Data-property/Data-value/Categorical-value" and cannot be used as an extension. Indices ([object Object], ). (For more information on this HED error, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#tag-extension-invalid.)
                /task-social_events.json - ERROR: [TAG_EXTENSION_INVALID] "Categorical-value" appears as "Property/Data-property/Data-value/Categorical-value" and cannot be used as an extension. Indices ([object Object], ). (For more information on this HED error, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#tag-extension-invalid.)
        Please visit https://neurostars.org/search?q=HED_ERROR for existing conversations about this issue.
        [ERROR] HED_INTERNAL_ERROR An internal error occurred during HED validation.
                GENERIC_ERROR
                /sub-0001/ses-02/func/sub-0001_ses-02_task-faces_acq-mb8_run-01_events.tsv - ERROR: [GENERIC_ERROR] Internal error - message: "Attempting to access the onset of a TSV row without one.". (For more information on this HED error, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#generic-error.)
                /sub-0001/ses-02/func/sub-0001_ses-02_task-faces_acq-mb8_run-02_events.tsv - ERROR: [GENERIC_ERROR] Internal error - message: "Attempting to access the onset of a TSV row without one.". (For more information on this HED error, see https://hed-specification.readthedocs.io/en/latest/Appendix_B.html#generic-error.)
        Please visit https://neurostars.org/search?q=HED_INTERNAL_ERROR for existing conversations about this issue.
        [ERROR] STIMULUS_FILE_MISSING A stimulus file was declared but not found in the dataset.
(deno) yoh@typhon:/mnt/DATA/data/yoh/1076_spacetop$ tail logs/deno-bids-validator.log

          Summary:                           Available Tasks:        Available Modalities:
          26373 Files, 2.23 TB               alignvideo              MRI                  
          118 - Subjects 4 - Sessions        faces                                        
                                             fractional                                   
                                             narratives                                   
                                             shortvideo                                   
                                             social                                       

        If you have any questions, please post on https://neurostars.org/tags/bids.

so took about 5 minutes... initial run which failed to save log due to missing lead dir took the same-ish.

[yarikoptic]

so is the problem that job times out and never reported completed?