Support overrepresentation analysis

v0.12.0

set version to v12.0

Support KMER counting

v0.11.0

set version to v0.11.0

Support polyG tail trimming

For Illumina NextSeq/NovaSeq data, polyG can happen in read tails since G means no signal in the Illumina two-color systems. fastp can detect the polyG in read tails and trim them. This feature is enabled for NextSeq/NovaSeq data by default, and you can specify -g or --trim_poly_g to enable it for any data, or specify -G or --disable_trim_poly_g to disable it. NextSeq/NovaSeq data is detected by the machine ID in the FASTQ records.

Revision with number formatting and read number evaluation

v0.9.1

set version to v0.9.1

Support UMI processing

v0.9.0

support per_index / per_read for UMI processing

Support splitting by lines

v0.8.0

fix a typo of split

Support base correction by overlap analysis

v0.7.0

set version to v0.7.0

Small bug fix for FASTQ format handling

v0.6.1

set version to v0.6.1

Support long reads (PacBio / Nanopore)

v0.6.0

set version to v0.6.0

Detect adapter sequence automatically for SE data

v0.5.0

fix memory header file issue for Linux