n1850.FATES-SP.ne30_tn14.alpha08d.20241209 (SP baseline)

[rosiealice]

Purpose:
Baseline run of the present FATES-SP tag with MEGAN switched on, but without matvey's additional changes.

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Description:

To get the code

git clone https://github.com/NorESMhub/NorESM.git
cd NorESM
git checkout noresm2_5_alpha08d
./bin/git-fleximod update

• NOTE: a memory leak is present in the run.
  See memory leak in n1850 case NorESM#550

• create_newcase commnad

 ./create_newcase --case n1850.FATES-SP.ne30_tn14.alpha08d.20241209 --compset 1850_DATM%QIA_CLM60%FATES-SP_SICE_SOCN_MOSART_SGLC_SWAV --res ne30pg3_tn14 --project NN9188K --run-unsupported --mach betzy

• user_nl_clm
  Add the following to user_nl_clm

fates_paramfile='/cluster/work/users/rosief/git/NorESM_MEGAN_test/components/clm/src/fates/parameter_files/fates_params_megan_twostream.nc'
z0param_method='ZengWang2007'

Add to fexcld. 
'FATES_LEAFMAINTAR', 'FATES_MAINT_RESP', 
'FATES_NPP','FATES_NPP_PF','FATES_MORTALITY_LOGGING_SE_SZ',
'FATES_MORTALITY_HYDRAULIC_SE_SZ','FATES_MORTALITY_FREEZING_SE_SZ',
'FATES_MORTALITY_CSTARV_SE_SZ','FATES_MORTALITY_CANOPY_SE_SZ',
'FATES_MORTALITY_CANOPY_SE_SZ','FATES_MORTALITY_BACKGROUND_SE_SZ',
'FATES_MORTALITY_BACKGROUND_SE_SZ','FATES_MORTALITY_AGESCEN_SE_SZ',
'FATES_VEGC_SE_PF','FATES_RECRUITMENT_CFLUX_PF','FATES_NPP_SE_PF',
'FATES_NPP_SE_PF','FATES_NPLANT_SEC_PF','FATES_NOCOMP_PATCHAREA_PF',
'FATES_NOCOMP_NPATCHES_PF','FATES_NOCOMP_BURNEDAREA_PF',
'FATES_MORT_CSTARV_CONT_CFLUX_PF','FATES_MORTALITY_HYDRO_CFLUX_PF',
'FATES_MORTALITY_FIRE_CFLUX_PF','FATES_MORTALITY_CSTARV_CFLUX_PF',
'FATES_MORTALITY_CFLUX_PF','FATES_MEANSMP_DROUGHTPHEN_PF',
'FATES_MEANLIQVOL_DROUGHTPHEN_PF','FATES_LEAFC_PF',
'FATES_L2FR_USTORY_REC_PF','FATES_L2FR_CANOPY_REC_PF',
'FATES_GPP_SE_PF','FATES_ELONG_FACTOR_PF','FATES_DROUGHT_STATUS_PF',
'FATES_DAYSINCE_DROUGHTLEAFON_PF','FATES_DAYSINCE_DROUGHTLEAFOFF_PF',
'FATES_CANOPYCROWNAREA_PF','FATES_TRANSITION_MATRIX_LULU',
'FATES_DISTURBANCE_RATE_MATRIX_LULU','FATES_PATCHAREA_LU',
'FATES_CANOPYAREA_HT',''FATES_HARVEST_DEBT','FATES_GPP_SECONDARY',
'FATES_GROWTH_RESP_SECONDARY','FATES_HARVEST_DEBT','FATES_HARVEST_DEBT_SEC',
'FATES_LAI_SECONDARY','FATES_LUCHANGE_WOODPROD_C_FLUX','FATES_MAINT_RESP_SECONDARY','FATES_LUCHANGE_WOODPROD_C_FLUX','FATES_MAINT_RESP_UNREDUCED',
'FATES_NCOHORTS_SECONDARY','FATES_NPATCHES_SECONDARY','FATES_NPP_SECONDARY',
'FATES_SECONDARY_FOREST_VEGC','FATES_SEEDLING_POOL','FATES_SEEDS_IN_LOCAL',
'FATES_STOREC_TF','FATES_UNGERM_SEED_BANK','FATES_WOOD_PRODUCT','FATES_AUTORESP_SECONDARY','FATES_BA_WEIGHTED_HEIGHT','FATES_CBALANCE_ERROR','FATES_EXCESS_RESP';
'

• xmlchange commands

./xmlchange STOP_OPTION=nyears
./xmlchange STOP_N=10
./xmlchange --subgroup case.run JOB_WALLCLOCK_TIME=10:00:00
./xmlchange --subgroup case.st_archive JOB_WALLCLOCK_TIME=03:00:00
./xmlchange CLM_BLDNML_OPTS="-megan" --append

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Compset long name
1850_DATM%QIA_CLM60%FATES-SP_SICE_SOCN_MOSART_SGLC_SWAV

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Model grid long name
a%ne30np4.pg3_l%ne30pg4.pg3_oi%tnx1v4_r%r05_w%null_z%null_g%gris4_m%tnx1v4

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Case directory:

• Locally on betzy:
  /cluster/work/users/rosief/git/noresm2_5_alpha08d/cime/scripts/FATES-SP.alpha08d

• On github:
  tbd

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Code version on github (either NorESMhub or user's fork):

• On github: https://github.com/NorESMhub/NorESM/releases/tag/noresm2_5_alpha08d
• https://github.com/username/noresm/tree/<code_version>

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Diagnostics:

• Diags (if available):
  https://ns9560k.web.sigma2.no/datalake/diagnostics/noresm/rosief/n1850.FATES-SP.ne30_tn14.alpha08d.20241209/

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Output:

• Raw output on nird (if still available):
• /datalake/NS9560K/noresm3/cases/n1850.FATES-SP.ne30_tn14.alpha08d.20241209/lnd/hist/

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Contacts:
@rosiealice

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Extra details: