vrfy_jobcard.sh.j2

#!/bin/bash
#SBATCH --job-name={{ job_name | default("marine_vrfy") }}    # Assign a name to the job (customize as needed)
#SBATCH --account={{ account | default("da-cpu") }}
#SBATCH --qos={{ qos | default("debug") }}
{% set OUTPUT = "vrfy_jobcard." + pslot + "." + pdy + "." + cyc + ".log" %}
#SBATCH --output={{ OUTPUT }}
#SBATCH --nodes={{ nodes | default(1) }}                  # Request 1 node
#SBATCH --tasks={{ ntasks | default(20) }}               # Request total tasks (processors across nodes)
{% set HPC = hpc | default("hera") %}
{% if HPC == "hera" %}
#SBATCH --partition={{ partition | default("hera") }}     # Specify the partition (cluster)
{% endif %}
#SBATCH --mem={{ memory | default("24GB") }}              # Request memory
#SBATCH --time={{ walltime | default("00:30:00") }}       # Set the walltime limit

# Define HOMEgdas
export HOMEgdas="{{ homegdas }}"

# Load EVA module
module use ${HOMEgdas}/modulefiles
module load {{ eva_module | default("EVA/hera") }}

# Set PYTHONPATH using HOMEgfs
export PYTHONPATH="${HOMEgdas}:$PYTHONPATH"

# Set flags to control plotConfig in the Python script
export PLOT_ENSEMBLE_B={{ plot_ensemble_b | default("OFF") }}
export PLOT_PARAMETRIC_B={{ plot_parametric_b | default("ON") }}
export PLOT_BACKGROUND={{ plot_background | default("ON") }}
export PLOT_INCREMENT={{ plot_increment | default("ON") }}
export PLOT_ANALYSIS={{ plot_analysis | default("OFF") }}
export PLOT_ANALYSIS={{ plot_analysis | default("OFF") }}
export EVA_PLOTS={{ eva_plots | default("OFF") }}

# Define and export the environment variables
export cyc="{{ cyc }}"
export RUN="{{ run | default("gdas") }}"
export PSLOT="{{ pslot }}"
export PDY="{{ pdy }}"
export VRFYOUT="{{ vrfyout | default("./vrfyout") }}"/${RUN}.${PDY}.${cyc}

# Define base experiment path
BASE_EXP_PATH="{{ base_exp_path }}"  # path to the gdas.pdy directory

# Calculate previous date and cycle
PREV_CYC=$(date -d "{{ pdy }} {{ cyc }} -6 hours" +"%Y%m%d %H")
PREV_PDY=$(echo $PREV_CYC | cut -d' ' -f1)
PREV_CYC_HOUR=$(echo $PREV_CYC | cut -d' ' -f2)

# Define and export environment variables with paths
export COM_OCEAN_ANALYSIS="${BASE_EXP_PATH}/gdas.{{ pdy }}/{{ cyc }}/analysis/ocean"
export COM_ICE_HISTORY_PREV="${BASE_EXP_PATH}/gdas.${PREV_PDY}/${PREV_CYC_HOUR}/model/ice/history"
export COM_OCEAN_HISTORY_PREV="${BASE_EXP_PATH}/gdas.${PREV_PDY}/${PREV_CYC_HOUR}/model/ocean/history"

# Execute Marine Verify Analysis
python3 ${HOMEgdas}/vrfy_script.py