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Improve scripts/exrtofs_glo_ncoda_inc.sh script hycom_var restart input files checking (#1589) #46

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DanIredell-NOAA opened this issue Nov 5, 2024 · 1 comment

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@DanIredell-NOAA
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http://www2.spa.ncep.noaa.gov/bugzilla/show_bug.cgi?id=1589

Please improve the scripts/exrtofs_glo_ncoda_inc.sh script hycom_var restart file checking as followings -

background -
In scripts/exrtofs_glo_ncoda_inc.sh, when either one hycom_var seatmp or salint or uucurr or vvcurr or lyrprs or icecov files are missing, job proceeds with WARNING message, but fails later at $EXECrtofs/rtofs_raw2hycom or $EXECrtofs/rtofs_ncoda_archv_inc. If these hycom_var restart inputs are critical, it should fail the job with FATAL ERROR message, instead of WARNING message.

IT test job logfile /lfs/h1/ops/test/output/20240718/rtofs_global_ncoda_inc.o158320305 on Dogwood
WARNING - /lfs/h1/ops/test/com/rtofs/v2.4/rtofs.20240715/ncoda/hycom_var/restart/seatmp_pre_1o4500x3298_2024071400_0000_analinc missing.
WARNING - /lfs/h1/ops/test/com/rtofs/v2.4/rtofs.20240715/ncoda/hycom_var/restart/salint_pre_1o4500x3298_2024071400_0000_analinc missing..
failed at exec/rtofs_ncoda_archv_inc
“2 + /lfs/h1/ops/test/packages/rtofs.v2.4.3/exec/rtofs_ncoda_archv_inc
forrtl: No such file or directory
forrtl: severe (29): file not found, unit 9, file /lfs/f1/ops/para/tmp/rtofs_global_ncoda_inc.158320305.dbqs01/temp_2024071400_analinc

/lfs/h1/ops/test/output/20240718/rtofs_global_ncoda_inc.o158327814
:WARNING - /lfs/h1/ops/test/com/rtofs/v2.4/rtofs.20240715/ncoda/hycom_var/restart/icecov_sfc_1o4500x3298_2024071400_0000_analfld missing.
Failed at exec/rtofs_raw2hycom -
0 + /lfs/h1/ops/test/packages/rtofs.v2.4.3/exec/rtofs_raw2hycom icecov_2024071400_analfld 4500 3298 999.00 ssmi1.a
1 + err=3
….

Please improve the scripts/exrtofs_glo_ncoda_inc.sh script hycom_var restart file checking with FATAL ERROR message when they are not available and fails the job at right place.

@DanIredell-NOAA
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Modified scripts/exrtofs_glo_ncoda_inc.sh to check for required hycom_var files. If any do not exist then exit with a fatal message.

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