[Source]: ProteomeXchange

[EmilyHaag]

Source Name

ProteomeXchange

Source URL

https://www.proteomexchange.org/

Source Description

ProteomeXchange is a global consortium of proteomics data repositories that facilitates the sharing, dissemination, and reuse of proteomics data. The consortium was established to standardize the submission and distribution of mass spectrometry (MS)-based proteomics datasets. ProteomeXchange provides open access to comprehensive proteomics data, including raw mass spectrometry data, processed protein identifications, and more.

Source Access

No access issue, account not needed

Source Funding

NIH, Wellcome Trust

Source Relevance

Integrating ProteomeXchange into the NIAID Data Ecosystem would provide researchers with access to a vast collection of proteomics data that supports IID research. Its inclusion enhances multi-omics research, enabling more comprehensive analyses of complex biological systems. This source was prioritized for inclusion by ODSET.

Related WBS task

• Check here if this repository is funded by NIAID (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/11)
• Check here if this repository only has IID data (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/12)
• Check here if this is a generalist repository with IID data (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/12)

For internal use only. Assignee, please select the status of this issue

• Not yet started
• In process
• Blocked
• Will not include

Status Description

No response

Source to-do list

• License check- Can this source be included?
• Class check- Does this source have the right class of research output for inclusions?
• NIAID Review- Does NIAID approve of the inclusion of this source?
• Data access check- Have data access issues been resolved?
• Structured data check- Does this source have structured data?
• Mapping check- Has the properties from this source been mapped to the schema?
• Parser check- Has the parser been written?
• Parsed data check- Has a sanity check on the data obtained from this source been performed?
• Merge data- Has the crawler/plugin been successfully integrated with the system?
• Issues could not be resolved - Add as a single record via the DDE