[Source]: Microbe and Disease Phenotype Association Database (MicroPhenoDB)

[EmilyHaag]

Source Name

Microbe and Disease Phenotype Association Database (MicroPhenoDB)

Source URL

http://liwzlab.ifr.fidt.top:61010/microphenodb/#/home

Source Description

MicroPhenoDB is a database of phenotypic data associated with microorganisms, including bacteria, fungi, viruses, and protists. This data is manually collected and curated from the guideline of Infectious Diseases Society of America (IDSA) and the NCI pathogenic thesaurus (OBO Edition), includes microbe-disease association data from the HMDAD and Disbiome databases, and connects microbial core genes from the MetaPhlan2 dataset.

Source Access

No access issue, account not needed

Source Funding

National Key R&D Program of China, National Natural Science Foundation of China

Source Relevance

MicroPhenoDB offers phenotypic data on microorganisms that are critical to IID. The database’s focus on microbial phenotypes provides insight into host-pathogen interactions, supporting NIAID’s efforts to understand disease mechanisms and identify therapeutic targets.

Related WBS task

• Check here if this repository is funded by NIAID (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/11)
• Check here if this repository only has IID data (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/12)
• Check here if this is a generalist repository with IID data (https://github.com/NIAID-Data-Ecosystem/nde-roadmap/issues/12)

For internal use only. Assignee, please select the status of this issue

• Not yet started
• In process
• Blocked
• Will not include

Status Description

No response

Source to-do list

• License check- Can this source be included?
• Class check- Does this source have the right class of research output for inclusions?
• NIAID Review- Does NIAID approve of the inclusion of this source?
• Data access check- Have data access issues been resolved?
• Structured data check- Does this source have structured data?
• Mapping check- Has the properties from this source been mapped to the schema?
• Parser check- Has the parser been written?
• Parsed data check- Has a sanity check on the data obtained from this source been performed?
• Merge data- Has the crawler/plugin been successfully integrated with the system?
• Issues could not be resolved - Add as a single record via the DDE