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‎.gitignore

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dist/
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classes/

‎ReadMe.txt

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CDISC Changes Report Generator
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==============================
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This program will generate a changes report between two CDISC releases.
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The releases may span any amount of time.
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Requirements
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------------
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Git
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Apache Ant
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Java Developers Kit
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Building the program
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--------------------
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Clone the DiffCDISC repository onto your local filesystem using Git.
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C:\> git clone https://github.com/NCIEVS/diff-cdisc.git
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Open a Command Prompt and navigate to the repository directory.
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Run an ant build
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C:\DiffCDISC> ant build
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This will create a 'classes' and add a jar file to the 'dist' directory
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where program dependancies are stored. The program is now ready to run.
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NOTE: If the build fails, you may need to inspect your ant configurations.
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See: https://ant.apache.org/manual/
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Preparing data for the program
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------------------------------
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Users should pull two reports in .txt format from the same EVS CDISC
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Archive directory (e.g., ADaM, SDTM, SEND).
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Included in this repository are two example reports from the SDTM Archive
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directory. The example below will demonstrate how to run the program
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using these two files.
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Running the program
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-------------------
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Each report is input into the program (newest followed by oldest),
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followed by a "release date" and then the filename of the output.
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C:\DiffCDISC\dist>RunChanges "..\docs\SDTM Terminology 2015-09-25.txt" "..\docs\SDTM Terminology 2015-06-26.txt" "9/25/2015" Changes.txt
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Initializing diff report...
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Getting changes...
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Printing changes report...
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About the program
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-----------------
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The following changes between CDISC releases are detected. In the event
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of an Update, original and new values are reported.
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- Add new CDISC Synonym
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- Add new term to existing codelist
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- Add new term to new codelist
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- Addition of new codelist
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- Remove CDISC Synonym
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- Remove term entirely from codelist
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- Remove term from retired codelist
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- Retire codelist
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- Update CDISC Codelist Name
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- Update CDISC Definition
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- Update CDISC Extensible List
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- Update CDISC Submission Value
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- Update NCI Preferred Term
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Known issues
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------------
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The 'Request Code' column will always be empty as they are stored in the
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JIRA tracking system. This column is manually populated by EVS before
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each quarterly release.

‎build.xml

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<project name="DiffCDISC" basedir=".">
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<!-- *************************** -->
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<!-- Properties -->
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<!-- *************************** -->
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<property name="dist.dir" value="./dist"/>
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<property name="classes.dir" value="./classes"/>
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<property name="src.dir" value="./src"/>
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<!-- *************************** -->
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<!-- Targets for building -->
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<!-- *************************** -->
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<target name="clean" description="Removes generated artifacts">
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<delete dir="${classes.dir}" quiet="true"/>
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<delete file="${dist.dir}/DiffCDISC.jar" quiet="true"/>
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</target>
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<target name="init" depends="clean" description="Creates necessary directories">
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<mkdir dir="${classes.dir}"/>
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</target>
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<target name="compile" depends="init" description="Compiles">
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<javac srcdir="${src.dir}" destdir="${classes.dir}" encoding="cp1252" debug="true" debuglevel="lines,source"/>
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</target>
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<!-- *******************************-->
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<!-- Targets for packaging -->
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<!-- *******************************-->
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<target name="build" depends="compile" description="Package code into a jar file">
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<jar destfile= "${dist.dir}/DiffCDISC.jar" basedir="${classes.dir}"/>
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</target>
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</project>
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‎docs/SDTM Terminology 2015-06-26.txt

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‎docs/SDTM Terminology 2015-09-25.txt

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‎scripts/RunChanges.bat

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@echo off
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java -cp "DiffCDISC.jar" gov.nih.nci.evs.cdisc.Diff %*

‎src/gov/nih/nci/evs/cdisc/Change.java

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package gov.nih.nci.evs.cdisc;
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public class Change {
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private String releaseDate;
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private String requestCode;
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private String changeType;
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private String code;
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private String termType;
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private String codelistShortName;
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private String codelistLongName;
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private String changeSummary;
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private String originalValue;
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private String newValue;
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private int noCCode;
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public Change(String relDate, String reqCode, String chType, String c, String tType, String clsn, String clln, String cs, String ov, String nv) {
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this.releaseDate = relDate;
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this.requestCode = reqCode;
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this.changeType = chType;
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this.code = c;
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this.noCCode = Integer.parseInt(code.replace("C", ""));
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this.termType = tType;
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this.codelistShortName = clsn;
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this.codelistLongName = clln;
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this.changeSummary = cs;
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this.originalValue = ov;
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this.newValue = nv;
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}
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public String getReleaseDate() {
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return this.releaseDate;
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}
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public String getRequestCode() {
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return this.requestCode;
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}
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public String getChangeType() {
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return this.changeType;
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}
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public String getCode() {
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return this.code;
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}
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public String getTermType() {
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return this.termType;
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}
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public String getShortName() {
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return this.codelistShortName;
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}
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public String getLongName() {
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return this.codelistLongName;
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}
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public String getChangeSummary() {
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return this.changeSummary;
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}
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public String getOriginalValue() {
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return this.originalValue;
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}
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public String getNewValue() {
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return this.newValue;
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}
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public int getNoCCode() {
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return this.noCCode;
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}
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public String toString() {
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return this.releaseDate + "\t" + this.requestCode + "\t" + this.changeType + "\t" +
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this.code + "\t" + this.termType + "\t" + this.codelistShortName + "\t" + this.codelistLongName + "\t" +
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this.changeSummary + "\t" + this.originalValue + "\t" + this.newValue + "\n";
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}
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}

‎src/gov/nih/nci/evs/cdisc/Codelist.java

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package gov.nih.nci.evs.cdisc;
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public class Codelist {
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private String code;
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private String extensible;
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private String name;
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private String subValue;
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private String[] synonyms;
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private String definition;
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private String pt;
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public Codelist (String c, String ext, String n, String sub, String syns, String def, String ncipt) {
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this.code = c;
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this.extensible = ext;
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this.name = n;
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this.subValue = sub;
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this.synonyms = syns.split(";");
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for(int i=0; i < synonyms.length; i++) {
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synonyms[i] = synonyms[i].trim();
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}
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this.definition = def;
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this.pt = ncipt;
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}
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public String getCode() {
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return code;
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}
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public String getExtensible() {
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return extensible;
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}
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public String getName() {
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return name;
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}
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public String getSubValue() {
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return subValue;
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}
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public String[] getSynonyms() {
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return synonyms;
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}
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public String getDefinition() {
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return definition;
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}
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public String getPT() {
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return pt;
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}
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}

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