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davidmeunier79davidmeunier79
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Merge spm ants macapype (#62)
* brain_old_segment + export_5tt and IsoSurface one step lower
1 parent 4d964c2 commit 3164b46

21 files changed

Lines changed: 331 additions & 353 deletions

‎workflows/params_segment_macaque_0p5_ants_4animal_skull.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{

‎workflows/params_segment_macaque_0p5_ants_4animal_skullnoisypetra.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

‎workflows/params_segment_macaque_0p5_ants_quick_skull.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{

‎workflows/params_segment_macaque_0p5_ants_quick_skullnoisypetra.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

‎workflows/params_segment_macaque_0p5_ants_skull.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{

‎workflows/params_segment_macaque_0p5_ants_skullnoisypetra.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

‎workflows/params_segment_macaque_ants_4animal_skull.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

‎workflows/params_segment_macaque_ants_4animal_skullnoisypetra.json‎

Lines changed: 11 additions & 11 deletions
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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

‎workflows/params_segment_macaque_ants_quick_skull.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{

‎workflows/params_segment_macaque_ants_quick_skullnoisypetra.json‎

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"wm": 4,
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"csf": [1, 5]
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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}
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},
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"export_5tt_pipe": {},
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"IsoSurface_brain_pipe":
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{
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"merge_brain_tissues":
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{
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"keep_indexes": [2, 3, 4]
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}
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},
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"IsoSurface_tissues_pipe":
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{
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},
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"skull_t1_pipe":
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{
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"headmask_t1_pipe":

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