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CHANGELOG.md

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Version 1.0.9

  • edge taxonomy cases like "tax=;;", "tax=tax=Bacteria;;;Firmicutes;;", and "Zotu111 Bacteria;;;Firmicutes;;" are handled safely

Version 1.0.8

  • *-All-FullTaxonomy.tab files will be created only if there are non-bacterial ZOTUs in the input ZOTU table.
  • Full-Taxonomy ZOTUs tables file names will have the original ZOTU table name as a prefix.

Version 1.0.7

  • Taxonomies in ZOTU table, if given, will be updated and written to the output directories
    • ZOTU-Table-All-FullTaxonomy.tab: A version of given ZOTU table with full taxonomy (7 levels) for all ZOTUs.
    • ZOTU-Table-OnlyBacteria-FullTaxonomy.tab: A version of given ZOTU table with full taxonomy (7 levels) for only Bacteria ZOTUs.

Version 1.0.6

  • TICAnalysis will take a logger object to replace with default logger.
  • Logger format changed to logg file and line of log origin

Version 1.0.5

Minor bugs in CLI arguments resolved. On failure uclust working directory | uclust_wd gets deleted if existed.

Version 1.0.4

  • Arguments passed to CLI gets converts to expected type.

    • threads: int
    • species_thr: float
    • genus_thr: float
    • family_thr: float

  • F/G/SOTU IDs take 0 as a separator between parent and children IDs

  • CLI gets --version/-v argument.