Merge branch 'release-v7.0'

This merge introduces v7.0 of all MPAS models.

For a summary of significant changes, please see the annotation of the v7.0 tag.

* release-v7.0: (182 commits)
  Add log message for lbc updates
  Update the descriptions of several initialization options for init case 9
  Change default value for config_blend_bdy_terrain to false
  Change default "lbc" stream's filename template to include minutes and seconds
  Communicate effective radii for cloud, ice, and snow between MPAS and WSM6
  Return error from read_stream() when inexact stream time not found
  Avoid calling mpas_atm_update_bdy_tend whenever config_apply_lbcs = false
  Fix race condition in file tests when clobber_mode = 'append' or 'overwrite'
  Remove broken log write of cf1,cf2,cf3 from init_atm_case_gfs
  When using specified zeta levels, set 'zt' for correct coordinate surface smoothing
  Introduce early check on whether boundary terrain blending will succeed or not
  Check for a valid vertical grid in init_case 9 (LBC setup case)
  Update version number to 7.0
  Migrate code for modifying relhum into its own function, convert_relhum_wrt_ice
  Recompute initial RH w.r.t. ice below freezing for consistency with model output
  Verify that config_apply_lbcs is consistent with values in bdyMaskCell field
  Verify that the input_interval for the 'lbc_in' stream is not 'none'
  Add stub routine, mpas_atm_bdy_checks, for checking of limited-area settings
  Halt if LBC data cannot be successfully read
  Fix decoding in script generated for regression suites
  ...

Author: mgduda

Makefile

@@ -1,4 +1,4 @@
-MPAS-v6.3
+MPAS-v7.0
 ====
 
 The Model for Prediction Across Scales (MPAS) is a collaborative project for

README.md

@@ -1,11 +1,11 @@
 # Duplicate logic from Tools/Makefile to set compile_threaded
-compile_threaded = false
+compile_threaded = FALSE
 ifeq ($(strip $(SMP)),TRUE)
-   compile_threaded = true
+   compile_threaded = TRUE
    THREADDIR = threads
 else
    ifeq ($(strip $(BUILD_THREADED)),TRUE)
-      compile_threaded = true
+      compile_threaded = TRUE
       THREADDIR = threads
    else
       THREADDIR = nothreads
@@ -53,20 +53,18 @@ override CPPINCLUDES += -I$(EXEROOT)/$(COMPONENT)/source/inc -I$(INSTALL_SHAREDP
 override FCINCLUDES += -I$(EXEROOT)/$(COMPONENT)/source/inc -I$(INSTALL_SHAREDPATH)/include -I$(INSTALL_SHAREDPATH)/$(COMP_INTERFACE)/$(ESMFDIR)/$(NINST_VALUE)/csm_share -I$(NETCDF)/include -I$(PIO) -I$(PNETCDF)/include
 LIBS += -L$(PIO) -L$(PNETCDF)/lib -L$(NETCDF)/lib -L$(LIBROOT) -L$(INSTALL_SHAREDPATH)/lib -lpio -lpnetcdf -lnetcdf
 
-ifneq (,$(findstring FORTRANUNDERSCORE, $(CPPFLAGS)))
-ifeq (,$(findstring DUNDERSCORE, $(CPPFLAGS)))
-    override CPPFLAGS += -DUNDERSCORE
-endif
-endif
-
 ifeq ($(DEBUG), TRUE)
     override CPPFLAGS += -DMPAS_DEBUG
 endif
 
-ifeq ($(compile_threaded), true)
+ifeq ($(compile_threaded), TRUE)
     override CPPFLAGS += -DMPAS_OPENMP
 endif
 
+ifeq "$(GEN_F90)" "true"
+    override CPPFLAGS += -Uvector
+endif
+
 all:
 	@echo $(CPPINCLUDES)
 	@echo $(FCINCLUDES)

src/Makefile.in.CESM

@@ -70,8 +70,8 @@ clean:
 .F.o:
 	$(RM) $@ $*.mod
 ifeq "$(GEN_F90)" "true"
-	$(CPP) $(CPPFLAGS) $(PHYSICS) $(CPPINCLUDES) $< > $*.f90
+	$(CPP) $(CPPFLAGS) $(PHYSICS) $(CPPINCLUDES) -I./inc $< > $*.f90
 	$(FC) $(FFLAGS) -c $*.f90 $(FCINCLUDES) -I../framework -I../operators -I./physics -I./dynamics -I./diagnostics -I./physics/physics_wrf -I../external/esmf_time_f90
 else
-	$(FC) $(CPPFLAGS) $(PHYSICS) $(FFLAGS) -c $*.F $(CPPINCLUDES) $(FCINCLUDES) -I../framework -I../operators -I./physics -I./dynamics -I./diagnostics -I./physics/physics_wrf -I../external/esmf_time_f90
+	$(FC) $(CPPFLAGS) $(PHYSICS) $(FFLAGS) -c $*.F $(CPPINCLUDES) $(FCINCLUDES) -I./inc -I../framework -I../operators -I./physics -I./dynamics -I./diagnostics -I./physics/physics_wrf -I../external/esmf_time_f90
 endif