From 24116584656309de0a08219ca6d41e68ee30c83d Mon Sep 17 00:00:00 2001
From: asaravia-butler <70983120+asaravia-butler@users.noreply.github.com>
Date: Wed, 31 Jul 2024 21:19:07 -0700
Subject: [PATCH 1/3] replace pd df append wth pd.concat

---
 scorect/scorect_api.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/scorect/scorect_api.py b/scorect/scorect_api.py
index 3815c11..4f3d1b3 100755
--- a/scorect/scorect_api.py
+++ b/scorect/scorect_api.py
@@ -115,13 +115,15 @@ def wrangle_ranks_from_anndata(anndata, cluster_key='louvain'):
     top_gene = pd.DataFrame(anndata.uns['rank_genes_groups']['names']).loc[:nb_marker]
     marker_df = pd.DataFrame()
     # Order values
+    concat_list = []
     for i in top_score.columns:
         concat = pd.concat([top_score[[str(i)]], top_adjpval[str(i)], top_gene[[str(i)]]], axis=1, ignore_index=True)
         concat['cluster_number'] = i
         col = list(concat.columns)
         col[0], col[1], col[-2] = 'z_score', 'adj_pvals', 'gene'
         concat.columns = col
-        marker_df = marker_df.append(concat)
+        concat_list.append(concat)
+    marker_df = pd.concat(concat_list, ignore_index=True)
     return marker_df
 
 

From 3a4600ee4b45cf0454f42928187df081f4297c07 Mon Sep 17 00:00:00 2001
From: asaravia-butler <70983120+asaravia-butler@users.noreply.github.com>
Date: Wed, 31 Jul 2024 21:25:34 -0700
Subject: [PATCH 2/3] Replace url with forked url

---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index 373b270..1dbca5c 100644
--- a/setup.py
+++ b/setup.py
@@ -12,7 +12,7 @@
     description="scoreCT: Automated cell type annotation in scRNA-seq data",
     long_description=long_description,
     long_description_content_type="text/markdown",
-    url="https://github.com/LucasESBS/scoreCT",
+    url="https://github.com/asaravia-butler/scoreCT",
     packages=setuptools.find_packages(),
     classifiers=(
             "Programming Language :: Python :: 3",

From a649affff114cfce428cf12c2e88bb90cefbc6e9 Mon Sep 17 00:00:00 2001
From: asaravia-butler <70983120+asaravia-butler@users.noreply.github.com>
Date: Wed, 31 Jul 2024 21:27:02 -0700
Subject: [PATCH 3/3] Replace url with forked url

---
 meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/meta.yaml b/meta.yaml
index 369d9ef..2ca3ba3 100644
--- a/meta.yaml
+++ b/meta.yaml
@@ -4,7 +4,7 @@ package:
 
 source:
   git_rev: v0.0.1
-  git_url: https://github.com/LucasESBS/scoreCT
+  git_url: https://github.com/asaravia-butler/scoreCT
 
 requirements:
   host:
@@ -21,7 +21,7 @@ requirements:
     - seaborn
 
 about:
-  home: https://github.com/LucasESBS/scoreCT
+  home: https://github.com/asaravia-butler/scoreCT
   license: MIT
   license_familY: MIT
   license_file: LICENSE.md