diff --git a/meta.yaml b/meta.yaml index 369d9ef..2ca3ba3 100644 --- a/meta.yaml +++ b/meta.yaml @@ -4,7 +4,7 @@ package: source: git_rev: v0.0.1 - git_url: https://github.com/LucasESBS/scoreCT + git_url: https://github.com/asaravia-butler/scoreCT requirements: host: @@ -21,7 +21,7 @@ requirements: - seaborn about: - home: https://github.com/LucasESBS/scoreCT + home: https://github.com/asaravia-butler/scoreCT license: MIT license_familY: MIT license_file: LICENSE.md diff --git a/scorect/scorect_api.py b/scorect/scorect_api.py index 3815c11..4f3d1b3 100755 --- a/scorect/scorect_api.py +++ b/scorect/scorect_api.py @@ -115,13 +115,15 @@ def wrangle_ranks_from_anndata(anndata, cluster_key='louvain'): top_gene = pd.DataFrame(anndata.uns['rank_genes_groups']['names']).loc[:nb_marker] marker_df = pd.DataFrame() # Order values + concat_list = [] for i in top_score.columns: concat = pd.concat([top_score[[str(i)]], top_adjpval[str(i)], top_gene[[str(i)]]], axis=1, ignore_index=True) concat['cluster_number'] = i col = list(concat.columns) col[0], col[1], col[-2] = 'z_score', 'adj_pvals', 'gene' concat.columns = col - marker_df = marker_df.append(concat) + concat_list.append(concat) + marker_df = pd.concat(concat_list, ignore_index=True) return marker_df diff --git a/setup.py b/setup.py index 373b270..1dbca5c 100644 --- a/setup.py +++ b/setup.py @@ -12,7 +12,7 @@ description="scoreCT: Automated cell type annotation in scRNA-seq data", long_description=long_description, long_description_content_type="text/markdown", - url="https://github.com/LucasESBS/scoreCT", + url="https://github.com/asaravia-butler/scoreCT", packages=setuptools.find_packages(), classifiers=( "Programming Language :: Python :: 3",