Add more options to VCF filtering. #9
Description
VCF files can currently only be filtered for variant frequencies and some annotation (transcripts, genes).
- It would be good to be able to filter on sequencing quality.
- It would be good to be able to filter on GQ.
- Determine good defaults for both.
Filtering on DP is harder because you need to take the sex chromosomes into account. How we will determine with certainty that a sample is male or female?