Add documentation for Running a Model, Gathering Results, and quantum computing context by Copilot · Pull Request #92 · JuliaQUBO/ToQUBO.jl

Copilot · 2025-12-02T04:01:47Z

Addresses documentation gaps identified in #59: stub pages for "Running a Model" and "Gathering Results" manual sections, and missing context about quantum annealing in examples.

Manual Documentation

Running a Model (docs/src/manual/2-model.md):

Model creation with ToQUBO.Optimizer and solver selection
Variable types (binary, integer, continuous) and encoding
Linear/quadratic constraints and objectives
Optimization workflow and solution status checking
Multiple solution handling
Complete workflow example (tested via CI)

Gathering Results (docs/src/manual/3-results.md):

Solution status retrieval (termination, primal, summary)
Variable values and objective extraction (single/multi-solution)
Compilation introspection (time, status, source/target models)
Penalty coefficient access
QUBOTools integration
Complete results retrieval example (tested via CI)

Examples Enhanced

Added quantum computing context to each example:

Knapsack: Quantum advantage for NP-hard problems
Integer Factorization: Shor's algorithm context, scaling considerations
Portfolio Optimization: Quantum finance applications

Testing Infrastructure

Manual examples are now part of the CI testing infrastructure:

Converted code examples to @example blocks for automated testing via Documenter.jl
Added QUBODrivers to docs dependencies to support example execution
All documentation examples are validated during CI runs

Example Usage

using JuMP, ToQUBO, QUBODrivers

model = Model(() -> ToQUBO.Optimizer(ExactSampler.Optimizer))
@variable(model, x[1:3], Bin)
@constraint(model, x[1] + x[2] + x[3] <= 2)
@objective(model, Max, x[1] + 2*x[2] + 3*x[3])

optimize!(model)

# Multiple solutions from QUBO samplers
for i in 1:result_count(model)
    println("Solution $i: $(value.(x, result=i))")
end

> [!WARNING]
>
>

Original prompt

This section details on the original issue you should resolve

<issue_title>Write Docs</issue_title>
<issue_description>There are a few comments in #59 about documentation. I'm listing them and other topics here as tasks for another PR yet to be opened.

Manual

Tell how to run a model

How to gather results

How to adjust compiler settings

Booklet

Organize the booklet and the manual into separate files.

Quadratization

Better explain what stable quadratizations are¹

Finish the primer on submodularity

Variable Encoding

Make the explanation uniform across different methods

Describe the methodology for the computation of the number of bits given an error tolerance²

Examples

"Mention how exciting is solving a problem with a quantum annealer maybe³"

Give more context for the prime factoring example⁴

</issue_description>

<agent_instructions>Aim to improve the documentation of this repository and the functions within it also including the section in the docs. The docs should build correctly</agent_instructions>

Comments on the Issue (you are @copilot in this section)

Fixes Write Docs #63

✨ Let Copilot coding agent set things up for you — coding agent works faster and does higher quality work when set up for your repo.

… context to examples Co-authored-by: bernalde <[email protected]>

…ences Co-authored-by: bernalde <[email protected]>

bernalde · 2025-12-03T04:27:39Z

@copilot consider the fact that there are now instructions for you to deploy the tests of this PR.

Copilot · 2025-12-03T04:38:35Z

Just as a heads up, I was blocked by some firewall rules while working on your feedback. Expand below for details.

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bernalde

The examples is the docs should be made part of the testing infrastructure and tested via CI using Documenter.jl

Co-authored-by: bernalde <[email protected]>

Copilot · 2025-12-17T19:39:12Z

The examples is the docs should be made part of the testing infrastructure and tested via CI using Documenter.jl

The manual examples are now tested via CI. Converted code blocks to @example blocks in manual/2-model.md and manual/3-results.md, and added QUBODrivers to docs dependencies. The documentation builds successfully with doctest enabled. (d51ae7d)

Initial plan

0ab53a7

Copilot AI assigned Copilot and bernalde Dec 2, 2025

Copilot started work on behalf of bernalde December 2, 2025 04:02 View session

Copilot AI and others added 2 commits December 2, 2025 04:25

Add documentation for Running a Model, Gathering Results, and quantum…

aebdcaa

… context to examples Co-authored-by: bernalde <[email protected]>

Address code review: use concrete solver examples and fix cross-refer…

1d417f7

…ences Co-authored-by: bernalde <[email protected]>

Copilot AI changed the title ~~[WIP] Update documentation for model running and results gathering~~ Add documentation for Running a Model, Gathering Results, and quantum computing context Dec 2, 2025

Copilot finished work on behalf of bernalde December 2, 2025 04:32

Copilot AI requested a review from bernalde December 2, 2025 04:32

Copilot started work on behalf of bernalde December 3, 2025 04:28 View session

Copilot finished work on behalf of bernalde December 3, 2025 04:38

bernalde marked this pull request as ready for review December 17, 2025 19:23

bernalde requested a review from pedromxavier December 17, 2025 19:23

bernalde requested changes Dec 17, 2025

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Copilot started work on behalf of bernalde December 17, 2025 19:27 View session

Enable doctest for manual examples and add QUBODrivers dependency

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Co-authored-by: bernalde <[email protected]>

Copilot finished work on behalf of bernalde December 17, 2025 19:39

Copilot AI requested a review from bernalde December 17, 2025 19:39

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Add documentation for Running a Model, Gathering Results, and quantum computing context#92

Add documentation for Running a Model, Gathering Results, and quantum computing context#92
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Copilot AI commented Dec 2, 2025 •

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Copilot AI commented Dec 2, 2025 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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Manual Documentation

Examples Enhanced

Testing Infrastructure

Example Usage

Manual

Booklet

Examples

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bernalde commented Dec 3, 2025

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Copilot AI commented Dec 17, 2025

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Copilot AI commented Dec 2, 2025 •

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