[TopOpt_in_PETSc] WIP: new builder (#3648)

* vendor PETSc

* Found license

* Fix license

* build but can't run ./topopt

* rm PETSc local build, rm patchelf

* typo

* expand cxxstrings

* add CompilerSupportLibs

* remove most of the rpaths

* Update T/TopOpt_in_PETSc/bundled/Makefile

* Apply suggestions from code review

* Apply suggestions from code review

* Update T/TopOpt_in_PETSc/bundled/Makefile

* [TopOpt_in_PETSc] Fixes for macOS and Windows

* [TopOpt_in_PETSc] No need to expand libgfortran versions

* Update Makefile

* Update Makefile

Co-authored-by: Mosè Giordano <[email protected]>

Author: rayegun

T/TopOpt_in_PETSc/build_tarballs.jl

@@ -0,0 +1,42 @@
+# Note that this script can accept some limited command-line arguments, run
+# `julia build_tarballs.jl --help` to see a usage message.
+using BinaryBuilder, Pkg
+
+name = "TopOpt_in_PETSc"
+version = v"0.1"
+
+# Collection of sources required to complete build
+sources = [
+    GitSource("https://github.com/topopt/TopOpt_in_PETSc", "26eecbf3b1d0135956e0364d77c30e43e9bc3db2"),
+    DirectorySource("./bundled"),
+]
+
+# Bash recipe for building across all platforms
+# New makefiles added, the patches fix some weird include issues mostly.
+# There is likely a better way to fix them, or upstream the fixes.
+script = raw"""
+cd TopOpt_in_PETSc
+make -f ../Makefile libtopopt.${dlext} topopt${exeext}
+install -Dvm 755 "topopt${exeext}" "${bindir}/topopt${exeext}"
+install -Dvm 755 "libtopopt.${dlext}" "${libdir}/libtopopt.${dlext}"
+install_license lesser.txt
+"""
+
+# These are the platforms we will build for by default, unless further
+# platforms are passed in on the command line
+platforms = expand_cxxstring_abis(supported_platforms(exclude=[Platform("i686", "windows")]))
+
+# The products that we will ensure are always built
+products = [
+    LibraryProduct("libtopopt", :libtopopt),
+    ExecutableProduct("topopt", :topopt)
+]
+
+# Dependencies that must be installed before this package can be built
+dependencies = [
+    Dependency("PETSc_jll"; compat="3.16.5"),
+    Dependency(PackageSpec(name="CompilerSupportLibraries_jll", uuid="e66e0078-7015-5450-92f7-15fbd957f2ae"))
+]
+
+# Build the tarballs, and possibly a `build.jl` as well.
+build_tarballs(ARGS, name, version, sources, script, platforms, products, dependencies; julia_compat="1.6", preferred_gcc_version=v"9")

T/TopOpt_in_PETSc/bundled/Makefile

@@ -0,0 +1,18 @@
+CXXFLAGS = -fPIC
+CPPFLAGS =-I. -I$(includedir) -I$(libdir)/petsc/double_real_Int32/include -I$(libdir)/petsc/double_real_Int32/
+LDFLAGS = -L$(libdir) -Wl,-rpath,$(libdir)/petsc/double_real_Int32/lib -L$(libdir)/petsc/double_real_Int32/lib
+LDLIBS = -lpetsc_double_real_Int32
+ifneq (,$(findstring mingw,$(target)))
+	LDLIBS += -lmsmpi
+else
+	LDLIBS += -lmpi
+endif
+
+topopt$(exeext): main.o TopOpt.o LinearElasticity.o MMA.o Filter.o PDEFilter.o MPIIO.o
+	$(CXX) $(CPPFLAGS) -o $@ $^ $(LDFLAGS) $(LDLIBS)
+
+libtopopt.$(dlext): TopOpt.o LinearElasticity.o MMA.o Filter.o PDEFilter.o MPIIO.o
+	$(CXX) $(CPPFLAGS) -shared -o $@ $^ $(LDFLAGS) $(LDLIBS)
+
+clean:
+	rm -rf topopt$(exeext) libtopopt.$(dlext) *.o output* binary* log* makevtu.pyc Restart*

T/TopOpt_in_PETSc/bundled/patches/petsc_name_mangle.patch

@@ -0,0 +1,14 @@
+diff --git a/config/BuildSystem/config/packages/BlasLapack.py b/config/BuildSystem/config/packages/BlasLapack.py
+index bbae50c096..9ad0a994eb 100644
+--- a/config/BuildSystem/config/packages/BlasLapack.py
++++ b/config/BuildSystem/config/packages/BlasLapack.py
+@@ -121,7 +121,8 @@ class Configure(config.package.Package):
+     foundLapack = 0
+     self.f2c    = 0
+     # allow a user-specified suffix to be appended to BLAS/LAPACK symbols
+-    self.suffix = self.argDB.get('with-blaslapack-suffix', '')
++    # argDB return a list when with-blaslapack-suffix is used
++    self.suffix = self.argDB.get('with-blaslapack-suffix', '')[0]
+     mangleFunc = self.compilers.fortranMangling
+     self.logPrint('Checking for Fortran name mangling '+mangleFunc+' on BLAS/LAPACK')
+     foundBlas = self.checkBlas(blasLibrary, self.getOtherLibs(foundBlas, blasLibrary), mangleFunc,'dot')