From a9a91086290e417c5fb010a9cd443a897f5089de Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?G=C3=B6khan?= <81560784+gokhanturer@users.noreply.github.com> Date: Fri, 11 Oct 2024 22:31:34 +0300 Subject: [PATCH] ner_oncology_posology_pipeline (#1541) --- .../C-K-Loan/2023-06-13-re_test_result_date_pipeline_en.md | 2 ++ .../C-K-Loan/2023-06-17-ner_bionlp_biobert_pipeline_en.md | 2 ++ .../C-K-Loan/2023-06-17-ner_chemprot_biobert_pipeline_en.md | 2 ++ .../C-K-Loan/2023-06-17-ner_clinical_biobert_pipeline_en.md | 2 ++ .../C-K-Loan/2023-06-17-ner_events_biobert_pipeline_en.md | 2 ++ .../C-K-Loan/2023-06-17-re_test_result_date_pipeline_en.md | 2 ++ ...023-03-09-ner_oncology_unspecific_posology_pipeline_en.md | 5 +++++ .../Cabir40/2023-03-20-ner_bionlp_biobert_pipeline_en.md | 5 +++++ .../Cabir40/2023-03-20-ner_chemprot_biobert_pipeline_en.md | 4 ++++ .../Cabir40/2023-03-20-ner_clinical_biobert_pipeline_en.md | 4 ++++ .../Cabir40/2023-03-20-ner_events_biobert_pipeline_en.md | 4 ++++ .../Cabir40/2023-06-13-re_test_result_date_pipeline_en.md | 2 ++ .../Cabir40/2023-06-16-ner_bionlp_biobert_pipeline_en.md | 2 ++ .../Cabir40/2023-06-16-ner_chemprot_biobert_pipeline_en.md | 2 ++ .../Cabir40/2023-06-16-ner_clinical_biobert_pipeline_en.md | 2 ++ .../Cabir40/2023-06-16-ner_events_biobert_pipeline_en.md | 2 ++ .../Cabir40/2023-06-16-re_test_result_date_pipeline_en.md | 2 ++ ...023-06-17-ner_oncology_unspecific_posology_pipeline_en.md | 1 + .../2023-06-13-ner_oncology_posology_pipeline_en.md | 1 + .../2023-06-13-re_test_result_date_pipeline_en.md | 2 ++ .../2023-06-16-ner_bionlp_biobert_pipeline_en.md | 2 ++ .../2023-06-16-ner_chemprot_biobert_pipeline_en.md | 2 ++ .../2023-06-16-ner_clinical_biobert_pipeline_en.md | 2 ++ .../2023-06-16-ner_events_biobert_pipeline_en.md | 2 ++ .../2023-06-16-re_test_result_date_pipeline_en.md | 2 ++ .../ahmet-mesut/2024-02-02-icd10pcs_resolver_pipeline_en.md | 4 ++++ .../akrztrk/2024-02-02-icd10pcs_resolver_pipeline_en.md | 4 ++++ .../2024-02-02-icd10pcs_resolver_pipeline_en.md | 4 ++++ .../2022-03-21-ner_bionlp_biobert_pipeline_en_3_0.md | 4 ++++ .../2022-03-21-ner_chemprot_biobert_pipeline_en_3_0.md | 4 ++++ .../2022-03-21-ner_clinical_biobert_pipeline_en_3_0.md | 4 ++++ .../2022-03-21-ner_events_biobert_pipeline_en_3_0.md | 4 ++++ .../2022-03-31-re_test_result_date_pipeline_en_3_0.md | 4 ++++ 33 files changed, 92 insertions(+) diff --git a/docs/_posts/C-K-Loan/2023-06-13-re_test_result_date_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-13-re_test_result_date_pipeline_en.md index 5db177a1b4..034ddd171e 100644 --- a/docs/_posts/C-K-Loan/2023-06-13-re_test_result_date_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-13-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/C-K-Loan/2023-06-17-ner_bionlp_biobert_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-17-ner_bionlp_biobert_pipeline_en.md index 59d6808869..8497e0b206 100644 --- a/docs/_posts/C-K-Loan/2023-06-17-ner_bionlp_biobert_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-17-ner_bionlp_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_bionlp_biobert](https://nlp ## Predicted Entities +`Gene_or_gene_product`, `Cancer`, `Cell`, `Cellular_component`, `Organism`, `Multi-tissue_structure`, `Developing_anatomical_structure`, `Amino_acid`, `Organ`, `Anatomical_system`, `Tissue`, `Organism_subdivision`, `Simple_chemical`, `Organism_substance`, `Immaterial_anatomical_entity`, `Pathological_formation` + {:.btn-box} diff --git a/docs/_posts/C-K-Loan/2023-06-17-ner_chemprot_biobert_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-17-ner_chemprot_biobert_pipeline_en.md index 8e0cf17b33..a8e1e87bb2 100644 --- a/docs/_posts/C-K-Loan/2023-06-17-ner_chemprot_biobert_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-17-ner_chemprot_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_chemprot_biobert](https://n ## Predicted Entities +`GENE-N`, `CHEMICAL`, `GENE-Y` + {:.btn-box} diff --git a/docs/_posts/C-K-Loan/2023-06-17-ner_clinical_biobert_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-17-ner_clinical_biobert_pipeline_en.md index a84e1a593a..01f279c224 100644 --- a/docs/_posts/C-K-Loan/2023-06-17-ner_clinical_biobert_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-17-ner_clinical_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_clinical_biobert](https://n ## Predicted Entities +`TREATMENT`, `PROBLEM`, `TEST` + {:.btn-box} diff --git a/docs/_posts/C-K-Loan/2023-06-17-ner_events_biobert_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-17-ner_events_biobert_pipeline_en.md index 5b738c6482..a2b819a560 100644 --- a/docs/_posts/C-K-Loan/2023-06-17-ner_events_biobert_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-17-ner_events_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_events_biobert](https://nlp ## Predicted Entities +`SPECIES`, `HUMAN` + {:.btn-box} diff --git a/docs/_posts/C-K-Loan/2023-06-17-re_test_result_date_pipeline_en.md b/docs/_posts/C-K-Loan/2023-06-17-re_test_result_date_pipeline_en.md index ce2856208f..978bff78ea 100644 --- a/docs/_posts/C-K-Loan/2023-06-17-re_test_result_date_pipeline_en.md +++ b/docs/_posts/C-K-Loan/2023-06-17-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-03-09-ner_oncology_unspecific_posology_pipeline_en.md b/docs/_posts/Cabir40/2023-03-09-ner_oncology_unspecific_posology_pipeline_en.md index 5e64ac4829..000a9bc1ed 100644 --- a/docs/_posts/Cabir40/2023-03-09-ner_oncology_unspecific_posology_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-03-09-ner_oncology_unspecific_posology_pipeline_en.md @@ -26,6 +26,11 @@ This pretrained pipeline is built on the top of [ner_oncology_unspecific_posolog [Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/ner_oncology_unspecific_posology_pipeline_en_4.3.0_3.2_1678347063020.zip){:.button.button-orange.button-orange-trans.arr.button-icon.hidden} [Copy S3 URI](s3://auxdata.johnsnowlabs.com/clinical/models/ner_oncology_unspecific_posology_pipeline_en_4.3.0_3.2_1678347063020.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3} +## Predicted Entities + +`Posology_Information`, `Cancer_Therapy` + + ## How to use diff --git a/docs/_posts/Cabir40/2023-03-20-ner_bionlp_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-03-20-ner_bionlp_biobert_pipeline_en.md index cd7d4b5076..1da7addfae 100644 --- a/docs/_posts/Cabir40/2023-03-20-ner_bionlp_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-03-20-ner_bionlp_biobert_pipeline_en.md @@ -20,6 +20,11 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_bionlp_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_bionlp_biobert_en.html) model. +## Predicted Entities + +`Gene_or_gene_product`, `Cancer`, `Cell`, `Cellular_component`, `Organism`, `Multi-tissue_structure`, `Developing_anatomical_structure`, `Amino_acid`, `Organ`, `Anatomical_system`, `Tissue`, `Organism_subdivision`, `Simple_chemical`, `Organism_substance`, `Immaterial_anatomical_entity`, `Pathological_formation` + + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-03-20-ner_chemprot_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-03-20-ner_chemprot_biobert_pipeline_en.md index e5945335fa..b4d56d9953 100644 --- a/docs/_posts/Cabir40/2023-03-20-ner_chemprot_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-03-20-ner_chemprot_biobert_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_chemprot_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_chemprot_biobert_en.html) model. +## Predicted Entities + +`GENE-N`, `CHEMICAL`, `GENE-Y` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-03-20-ner_clinical_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-03-20-ner_clinical_biobert_pipeline_en.md index 960737ba9c..fc9de2f191 100644 --- a/docs/_posts/Cabir40/2023-03-20-ner_clinical_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-03-20-ner_clinical_biobert_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_clinical_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_clinical_biobert_en.html) model. +## Predicted Entities + +`TREATMENT`, `PROBLEM`, `TEST` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-03-20-ner_events_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-03-20-ner_events_biobert_pipeline_en.md index 8ee9616075..ca42283e2d 100644 --- a/docs/_posts/Cabir40/2023-03-20-ner_events_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-03-20-ner_events_biobert_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_events_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_events_biobert_en.html) model. +## Predicted Entities + +`SPECIES`, `HUMAN` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-13-re_test_result_date_pipeline_en.md b/docs/_posts/Cabir40/2023-06-13-re_test_result_date_pipeline_en.md index 7f525e584d..02af84d5ae 100644 --- a/docs/_posts/Cabir40/2023-06-13-re_test_result_date_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-13-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-16-ner_bionlp_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-06-16-ner_bionlp_biobert_pipeline_en.md index af5ce66db1..a051a5b27b 100644 --- a/docs/_posts/Cabir40/2023-06-16-ner_bionlp_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-16-ner_bionlp_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_bionlp_biobert](https://nlp ## Predicted Entities +`Gene_or_gene_product`, `Cancer`, `Cell`, `Cellular_component`, `Organism`, `Multi-tissue_structure`, `Developing_anatomical_structure`, `Amino_acid`, `Organ`, `Anatomical_system`, `Tissue`, `Organism_subdivision`, `Simple_chemical`, `Organism_substance`, `Immaterial_anatomical_entity`, `Pathological_formation` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-16-ner_chemprot_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-06-16-ner_chemprot_biobert_pipeline_en.md index e1d7d3fe40..805c8ca46f 100644 --- a/docs/_posts/Cabir40/2023-06-16-ner_chemprot_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-16-ner_chemprot_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_chemprot_biobert](https://n ## Predicted Entities +`GENE-N`, `CHEMICAL`, `GENE-Y` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-16-ner_clinical_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-06-16-ner_clinical_biobert_pipeline_en.md index bc193b88a2..0b15f07bcb 100644 --- a/docs/_posts/Cabir40/2023-06-16-ner_clinical_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-16-ner_clinical_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_clinical_biobert](https://n ## Predicted Entities +`TREATMENT`, `PROBLEM`, `TEST` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-16-ner_events_biobert_pipeline_en.md b/docs/_posts/Cabir40/2023-06-16-ner_events_biobert_pipeline_en.md index bbb2ca118d..901e64abc5 100644 --- a/docs/_posts/Cabir40/2023-06-16-ner_events_biobert_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-16-ner_events_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_events_biobert](https://nlp ## Predicted Entities +`SPECIES`, `HUMAN` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-16-re_test_result_date_pipeline_en.md b/docs/_posts/Cabir40/2023-06-16-re_test_result_date_pipeline_en.md index 750db134d0..e1a69b07ef 100644 --- a/docs/_posts/Cabir40/2023-06-16-re_test_result_date_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-16-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/Cabir40/2023-06-17-ner_oncology_unspecific_posology_pipeline_en.md b/docs/_posts/Cabir40/2023-06-17-ner_oncology_unspecific_posology_pipeline_en.md index 0849a6c4db..0558b142ed 100644 --- a/docs/_posts/Cabir40/2023-06-17-ner_oncology_unspecific_posology_pipeline_en.md +++ b/docs/_posts/Cabir40/2023-06-17-ner_oncology_unspecific_posology_pipeline_en.md @@ -22,6 +22,7 @@ This pretrained pipeline is built on the top of [ner_oncology_unspecific_posolog ## Predicted Entities +`Posology_Information`, `Cancer_Therapy` {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-13-ner_oncology_posology_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-13-ner_oncology_posology_pipeline_en.md index 848bfed7ad..7ffe5112e2 100644 --- a/docs/_posts/ahmedlone127/2023-06-13-ner_oncology_posology_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-13-ner_oncology_posology_pipeline_en.md @@ -22,6 +22,7 @@ This pretrained pipeline is built on the top of [ner_oncology_posology](https:// ## Predicted Entities +`Posology_Information`, `Cancer_Therapy` {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-13-re_test_result_date_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-13-re_test_result_date_pipeline_en.md index 43a3683cdf..583b3135c0 100644 --- a/docs/_posts/ahmedlone127/2023-06-13-re_test_result_date_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-13-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-16-ner_bionlp_biobert_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-16-ner_bionlp_biobert_pipeline_en.md index f58631d798..086321eaf7 100644 --- a/docs/_posts/ahmedlone127/2023-06-16-ner_bionlp_biobert_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-16-ner_bionlp_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_bionlp_biobert](https://nlp ## Predicted Entities +`Gene_or_gene_product`, `Cancer`, `Cell`, `Cellular_component`, `Organism`, `Multi-tissue_structure`, `Developing_anatomical_structure`, `Amino_acid`, `Organ`, `Anatomical_system`, `Tissue`, `Organism_subdivision`, `Simple_chemical`, `Organism_substance`, `Immaterial_anatomical_entity`, `Pathological_formation` + {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-16-ner_chemprot_biobert_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-16-ner_chemprot_biobert_pipeline_en.md index 52c45d959a..275e355dcd 100644 --- a/docs/_posts/ahmedlone127/2023-06-16-ner_chemprot_biobert_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-16-ner_chemprot_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_chemprot_biobert](https://n ## Predicted Entities +`GENE-N`, `CHEMICAL`, `GENE-Y` + {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-16-ner_clinical_biobert_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-16-ner_clinical_biobert_pipeline_en.md index 2d6b4edea1..0e41756777 100644 --- a/docs/_posts/ahmedlone127/2023-06-16-ner_clinical_biobert_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-16-ner_clinical_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_clinical_biobert](https://n ## Predicted Entities +`TREATMENT`, `PROBLEM`, `TEST` + {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-16-ner_events_biobert_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-16-ner_events_biobert_pipeline_en.md index 0641ea326e..15ef657e12 100644 --- a/docs/_posts/ahmedlone127/2023-06-16-ner_events_biobert_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-16-ner_events_biobert_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [ner_events_biobert](https://nlp ## Predicted Entities +`SPECIES`, `HUMAN` + {:.btn-box} diff --git a/docs/_posts/ahmedlone127/2023-06-16-re_test_result_date_pipeline_en.md b/docs/_posts/ahmedlone127/2023-06-16-re_test_result_date_pipeline_en.md index 90617ce513..be6f8da719 100644 --- a/docs/_posts/ahmedlone127/2023-06-16-re_test_result_date_pipeline_en.md +++ b/docs/_posts/ahmedlone127/2023-06-16-re_test_result_date_pipeline_en.md @@ -22,6 +22,8 @@ This pretrained pipeline is built on the top of [re_test_result_date](https://nl ## Predicted Entities +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} diff --git a/docs/_posts/ahmet-mesut/2024-02-02-icd10pcs_resolver_pipeline_en.md b/docs/_posts/ahmet-mesut/2024-02-02-icd10pcs_resolver_pipeline_en.md index 37c2d1276f..fbc8bb1a2f 100644 --- a/docs/_posts/ahmet-mesut/2024-02-02-icd10pcs_resolver_pipeline_en.md +++ b/docs/_posts/ahmet-mesut/2024-02-02-icd10pcs_resolver_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pipeline extracts `Procedure` entities from clinical texts and map them to their corresponding ICD-10-PCS codes using `sbiobert_base_cased_mli` Sentence Bert Embeddings. +## Predicted Entities + +`Procedure` + {:.btn-box} diff --git a/docs/_posts/akrztrk/2024-02-02-icd10pcs_resolver_pipeline_en.md b/docs/_posts/akrztrk/2024-02-02-icd10pcs_resolver_pipeline_en.md index 790c87395a..2d713eebb2 100644 --- a/docs/_posts/akrztrk/2024-02-02-icd10pcs_resolver_pipeline_en.md +++ b/docs/_posts/akrztrk/2024-02-02-icd10pcs_resolver_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pipeline extracts `Procedure` entities from clinical texts and map them to their corresponding ICD-10-PCS codes using `sbiobert_base_cased_mli` Sentence Bert Embeddings. +## Predicted Entities + +`Procedure` + {:.btn-box} diff --git a/docs/_posts/bunyamin-polat/2024-02-02-icd10pcs_resolver_pipeline_en.md b/docs/_posts/bunyamin-polat/2024-02-02-icd10pcs_resolver_pipeline_en.md index 155aa2efe7..938a59e492 100644 --- a/docs/_posts/bunyamin-polat/2024-02-02-icd10pcs_resolver_pipeline_en.md +++ b/docs/_posts/bunyamin-polat/2024-02-02-icd10pcs_resolver_pipeline_en.md @@ -20,6 +20,10 @@ use_language_switcher: "Python-Scala-Java" This pipeline extracts `Procedure` entities from clinical texts and map them to their corresponding ICD-10-PCS codes using `sbiobert_base_cased_mli` Sentence Bert Embeddings. +## Predicted Entities + +`Procedure` + {:.btn-box} diff --git a/docs/_posts/murat-gunay/2022-03-21-ner_bionlp_biobert_pipeline_en_3_0.md b/docs/_posts/murat-gunay/2022-03-21-ner_bionlp_biobert_pipeline_en_3_0.md index 6069a209d4..cc1ccd64e0 100644 --- a/docs/_posts/murat-gunay/2022-03-21-ner_bionlp_biobert_pipeline_en_3_0.md +++ b/docs/_posts/murat-gunay/2022-03-21-ner_bionlp_biobert_pipeline_en_3_0.md @@ -21,6 +21,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_bionlp_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_bionlp_biobert_en.html) model. +## Predicted Entities + +`Gene_or_gene_product`, `Cancer`, `Cell`, `Cellular_component`, `Organism`, `Multi-tissue_structure`, `Developing_anatomical_structure`, `Amino_acid`, `Organ`, `Anatomical_system`, `Tissue`, `Organism_subdivision`, `Simple_chemical`, `Organism_substance`, `Immaterial_anatomical_entity`, `Pathological_formation` + {:.btn-box} diff --git a/docs/_posts/murat-gunay/2022-03-21-ner_chemprot_biobert_pipeline_en_3_0.md b/docs/_posts/murat-gunay/2022-03-21-ner_chemprot_biobert_pipeline_en_3_0.md index cd9836bc4e..8a18f4ff8f 100644 --- a/docs/_posts/murat-gunay/2022-03-21-ner_chemprot_biobert_pipeline_en_3_0.md +++ b/docs/_posts/murat-gunay/2022-03-21-ner_chemprot_biobert_pipeline_en_3_0.md @@ -21,6 +21,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_chemprot_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_chemprot_biobert_en.html) model. +## Predicted Entities + +`GENE-N`, `CHEMICAL`, `GENE-Y` + {:.btn-box} diff --git a/docs/_posts/murat-gunay/2022-03-21-ner_clinical_biobert_pipeline_en_3_0.md b/docs/_posts/murat-gunay/2022-03-21-ner_clinical_biobert_pipeline_en_3_0.md index d83d930728..11c6c21ff9 100644 --- a/docs/_posts/murat-gunay/2022-03-21-ner_clinical_biobert_pipeline_en_3_0.md +++ b/docs/_posts/murat-gunay/2022-03-21-ner_clinical_biobert_pipeline_en_3_0.md @@ -21,6 +21,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_clinical_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_clinical_biobert_en.html) model. +## Predicted Entities + +`TREATMENT`, `PROBLEM`, `TEST` + {:.btn-box} diff --git a/docs/_posts/murat-gunay/2022-03-21-ner_events_biobert_pipeline_en_3_0.md b/docs/_posts/murat-gunay/2022-03-21-ner_events_biobert_pipeline_en_3_0.md index 4e76b4e45a..e8ca65a340 100644 --- a/docs/_posts/murat-gunay/2022-03-21-ner_events_biobert_pipeline_en_3_0.md +++ b/docs/_posts/murat-gunay/2022-03-21-ner_events_biobert_pipeline_en_3_0.md @@ -21,6 +21,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [ner_events_biobert](https://nlp.johnsnowlabs.com/2021/04/01/ner_events_biobert_en.html) model. +## Predicted Entities + +`SPECIES`, `HUMAN` + {:.btn-box} diff --git a/docs/_posts/murat-gunay/2022-03-31-re_test_result_date_pipeline_en_3_0.md b/docs/_posts/murat-gunay/2022-03-31-re_test_result_date_pipeline_en_3_0.md index 997038fd32..9ab7ad9eb1 100644 --- a/docs/_posts/murat-gunay/2022-03-31-re_test_result_date_pipeline_en_3_0.md +++ b/docs/_posts/murat-gunay/2022-03-31-re_test_result_date_pipeline_en_3_0.md @@ -23,6 +23,10 @@ use_language_switcher: "Python-Scala-Java" This pretrained pipeline is built on the top of [re_test_result_date](https://nlp.johnsnowlabs.com/2021/02/24/re_test_result_date_en.html) model. +## Predicted Entities + +`Injury_or_Poisoning`, `Direction`, `Test`, `Route`, `Admission_Discharge`, `Death_Entity`, `Triglycerides`, `Oxygen_Therapy`, `Relationship_Status`, `Duration`, `Alcohol`, `Date`, `Drug`, `Hyperlipidemia`, `Respiration`, `Birth_Entity`, `VS_Finding`, `Age`, `Social_History_Header`, `Family_History_Header`, `Medical_Device`, `Labour_Delivery`, `BMI`, `Fetus_NewBorn`, `Temperature`, `Section_Header`, `Communicable_Disease`, `ImagingFindings`, `Psychological_Condition`, `Obesity`, `Sexually_Active_or_Sexual_Orientation`, `Modifier`, `Vaccine`, `Symptom`, `Pulse`, `Kidney_Disease`, `Oncological`, `EKG_Findings`, `Medical_History_Header`, `Cerebrovascular_Disease`, `Blood_Pressure`, `Diabetes`, `O2_Saturation`, `Heart_Disease`, `Employment`, `Frequency`, `Disease_Syndrome_Disorder`, `Pregnancy`, `RelativeDate`, `Procedure`, `Overweight`, `Race_Ethnicity`, `Hypertension`, `External_body_part_or_region`, `Imaging_Technique`, `Test_Result`, `Treatment`, `Substance`, `Clinical_Dept`, `LDL`, `Diet`, `Substance_Quantity`, `Allergen`, `Gender`, `RelativeTime`, `Total_Cholesterol`, `Internal_organ_or_component`, `Smoking`, `Vital_Signs_Header`, `Height`, `Form`, `Strength`, `Weight`, `Time`, `Dosage`, `HDL` + {:.btn-box} [Live Demo](https://demo.johnsnowlabs.com/healthcare/RE_CLINICAL_DATE/){:.button.button-orange}{:target="_blank"}