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@@ -7,7 +7,7 @@ Towards the identification of genetic basis of complex traits, transcriptome-wid
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### Installation
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rvTWAS is a batteries-included JAR executable. All needed external jar packages are included in the downloadable, rvTWAS.jar. To download all necessary files, users need to first ensure that "git-lfs" is succesfully installed. Then users can use the commands:\
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`git lfs install`\
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`git lfs clone https://github.com/QingrunZhangLab/rvTWAS.git`
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`git lfs clone https://github.com/JingniHe/rvTWAS.git`
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As we used an R package "susieR" and "SKAT", the users have to install "R", "susieR"(https://cran.r-project.org/web/packages/susieR/susieR.pdf),and "SKAT"(https://cran.r-project.org/web/packages/SKAT/index.html). The versions of "R", "SuSiE", and "SKAT" packages that we have used on our platform are: version 3.6.1 for "R", version 0.12.35 for "susieR", and version 2.0.0 for "SKAT". Users are also expected to have java (version: 1.8) and Plink (version: 1.9) installed on their platform.
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