workstation-website/index.html at master · JaneliaSciComp/workstation-website · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
---
layout: landing-page
---

<!-- One -->
<section id="download" class="wrapper style1">
    <header class="major">
        <h2>Download the Workstation client</h2>
        <p>The Workstation runs on all three major operating systems
        <br />
        <a href="requirements.html" style="font-size: 0.9em">System Requirements</a>
        </p>
    </header>
    <div class="container">
        <div class="row">
            <div class="4u">
                <section class="special box">
                    <i class="icon fa-apple major"></i>
                    <h3>Mac OS X</h3>
                    <p>Prerequisites: <a href="{{ site.urls.jdk.mac }}">JDK 8</a></p>
                    <div class="buttonrow">
                        <a href="{{ site.urls.download.mac }}" class="button alt">Download</a>
                    </div>
                    <div class="buttonrow">
                        {% if site.components.vaa3d %}
                        <a href="{{ site.urls.vaa3d.mac }}" class="button alt">Vaa3d</a>
                        {% endif %}
                        {% if site.components.fiji %}
                        <a href="{{ site.urls.fiji.mac }}" class="button alt">Fiji</a>
                        {% endif %}
                    </div>
                </section>
            </div>
            <div class="4u">
                <section class="special box">
                    <i class="icon fa-windows major"></i>
                    <h3>MS Windows</h3>
                    <p>Prerequisites: <a href="{{ site.urls.jdk.windows }}">JDK 8</a></p>
                    <div class="buttonrow">
                        <a href="{{ site.urls.download.windows }}" class="button alt">Download</a>
                    </div>
                    <div class="buttonrow">
                        {% if site.components.vaa3d %}
                        <a href="{{ site.urls.vaa3d.windows }}" onclick="alert('Windows build is currently unavailable'); return false;" class="button alt disabled">Vaa3d</a>
                        {% endif %}
                        {% if site.components.fiji %}
                        <a href="{{ site.urls.fiji.windows }}" class="button alt">Fiji</a>
                        {% endif %}
                    </div>
                </section>
            </div>
            <div class="4u">
                <section class="special box">
                    <i class="icon fa-linux major"></i>
                    <h3>Linux</h3>
                    <p>Prerequisites: <a href="{{ site.urls.jdk.linux }}">JDK 8</a></p>
                    <div class="buttonrow">
                        <a href="{{ site.urls.download.linux }}" class="button alt">Download</a><br />
                    </div>
                    <div class="buttonrow">
                        {% if site.components.vaa3d %}
                        <a href="{{ site.urls.vaa3d.linux }}" class="button alt">Vaa3d</a>
                        {% endif %}
                        {% if site.components.fiji %}
                        <a href="{{ site.urls.fiji.linux }}" class="button alt">Fiji</a>
                        {% endif %}
                    </div>
                </section>
            </div>
        </div>

        <div style="text-align: center; font-size: 0.9em">
            <a href="manual/install.html">Installation Instructions</a>
            {% if site.urls.fiji.h5jplugin %}
                | <a href="fiji_h5j_plugin.html">Fiji 12-bit H5J Plugin</a>
            {% endif %}
        </div>

    </div>
</section>

<!-- Two -->
<section id="learn" class="wrapper style2">
    <header class="major">
        <h2>Neuroscience Discovery platform</h2>
        <p>Supporting processing, analysis, and annotation of large-scale 3d microscopy data</p>
    </header>
    <div class="container">
        <div class="row">
            <div class="6u">
                <section class="special">
                    <a href="https://www.janelia.org/project-team/flylight" class="image fit"><img src="images/fly.jpg" alt="FlyLight" /></a>
                    <h3>Fly</h3>
                    <p>
                    The FlyLight project is creating a digital atlas of the <i>Drosophila</i> nervous system by studying confocal microscope images. The Workstation provides a complete set of image analysis services encompassing the entire image lifecycle from acquisition to publishing. Features include data set managment, metadata collection, LSM merging, MIP generation, image registration (i.e. alignment), neuron separation, ontology-driven annotation, and line publishing.
                    </p>
                    <ul class="actions">
                        <li><a href="https://www.janelia.org/project-team/flylight" class="button alt">Learn More</a></li>
                    </ul>
                </section>
            </div>
            <div class="6u">
                <section class="special">
                    <a href="https://www.janelia.org/project-team/mouselight" class="image fit"><img src="images/mouse.jpg" alt="MouseLight" /></a>
                    <h3>Mouse</h3>
                    <p>
                    The MouseLight project is leveraging new imaging techniques to reconstruct axonal arbors of neurons across the entire mouse brain. The Workstation provides advanced tools for visualizing stitched mouse brain images in both orthogonal and 3d views. It implements high-throughput manual annotation capabilities allowing annotators to trace individual neurons to generate complete axonal projection maps.
                    </p>
                    <ul class="actions">
                        <li><a href="https://www.janelia.org/project-team/mouselight" class="button alt">Learn More</a></li>
                    </ul>
                </section>
            </div>
        </div>
    </div>
</section>

<!-- Three -->
<section id="three" class="wrapper style1">
    <div class="container">
        {% if site.components.remote %}
        <div class="row">
            <div class="8u">
                {% include /remote.html %}
            </div>
            <div class="4u">
                <section>{% include /feature1.html %}</section>
                <hr />
                <section>{% include /feature2.html %}</section>
                <hr />
                <section>{% include /feature3.html %}</section>
                <hr />
                <ul class="actions">
                    <li><a href="docs.html" class="button alt">Learn More</a></li>
                </ul>
            </div>
        </div>
        {% else %}
        <div class="row">
            <div class="4u">
                {% include /feature1.html %}
            </div>
            <div class="4u">
                {% include /feature2.html %}
            </div>
            <div class="4u">
                {% include /feature3.html %}
            </div>
        </div>
        {% endif %}
    </div>
</section>