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Merge pull request #139 from jhlegarreta/MiscellaneousFixesInIntroductionAndInstallation
ENH: Miscellaneous fixes in introduction and installation
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‎SoftwareGuide/Latex/Introduction/Installation.tex

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@@ -17,7 +17,7 @@ \chapter{Configuring and Building ITK}
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systems, compilers, and hardware platforms including Microsoft Windows, Linux on
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various architectures, UNIX, macOS, and Mingw-w64. Dedicated community members and
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Kitware are committed to providing long-term support of the most prevalent
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development environments (Visual Studio, macOS, and Linux) for building ITK:
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development environments (e.g. Clang and Visual Studio) for building ITK.
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Compiler variants will be supported for the duration that the associated operating
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system vendors commit to in their long-term stable platforms. For example the gcc
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the Visual Studio series support will follow lifecycle deprecation of the compiler
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versions.
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% List updated according to information provided here:
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% https://www.itk.org/Wiki/ITK_Release_4/Modern_C++#Fully_Committed_to_Support
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For example as of 2019 the following time schedule is expected for supporting
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these compiler environments.
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For example, the following development and compiler environments are supported
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in ITK for the date at which the document was generated:
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%%
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%% The following compilers should have nightly dashboard in the "Expected builds"
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%% to ensure that support is maintained.
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%%
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\begin{itemize}
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\item GCC
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\begin{itemize}
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\item 4.8.2 (From 2015-until 2020) %% June 26, 2015 -- build_name "Ubuntu-g++-4.8.2-Release"
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%\item 5.x %% Release date April 22, 2015
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%\item 6.x %% April 27, 2016
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%\item 7.x %% May 2, 2017
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\end{itemize}
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\item Visual Studio % https://en.wikipedia.org/wiki/Microsoft_Visual_Studio
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\begin{itemize}
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\item 2015 [v14.X]
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\item 2017 [v15.X]
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\end{itemize}
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%% -we have no nightly builds
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%% \item Intel Compiler Suite %% https://en.wikipedia.org/wiki/Intel_C%2B%2B_Compiler
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%% \begin{itemize}
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%% \item 11.x % Released in 2008
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%% \item 12.x (including macOS release) % Released in 2011
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%% \item 13.x %Released in 2012
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%% \item 14.x %Released in 2013
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%% \item 15.x %Released in 2014
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%% \item 16.x %Released in 2015
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%% \item 17.x does not compile cleanly with macOS % Released in 2016
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%% \item 18.x % $Released in 2018
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%% \end{itemize}
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%% -- we have no nightly builds in Expected, only Exotic builds, and those are nto passing
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%% \item Win32-mingw-gcc-4.5
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\item Apple Clang
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\begin{itemize}
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\item Apple clang-600.0.56 (From 2013 - until 2019) %% mini9.nlm build_name "MacOSX-Xcode6"build perhaps has this compiler -- listed as unkown
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\item Apple LLVM version 8.1.0 (clang-802.0.42) (From 2016 - until 2021) %% Released in 2016, build_name "MacOSX-Clang-Ninja-Release"
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\end{itemize}
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\item Clang
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\begin{itemize}
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\item 3.3 (From 2013 - until 2018) % 17 Jun 2013 -- no build.
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%%\item 4.0 % 13 March 2017
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%%\item 5.0 % 7 September 2017
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\end{itemize}
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\item GCC 4.8 and newer
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\item Visual Studio 2015, 2017, 2019, toolsets 14.x, 15.0, 16.0
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\item Apple Clang 7.0 and newer
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\item Clang 6 and newer
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\end{itemize}
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Table~\ref{tab:CompileSupportTimeline} prints the compiler support timeline in
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ITK at the time of writing this guide.
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\begin{table}[h]
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\begin{center}
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\resizebox{\textwidth}{!}{
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\begin{tabular}{c c c c c c c c c c c c c c c c c}
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\toprule
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Compiler & 2011 & 2012 & 2013 & 2014 & 2015 & 2016 & 2017 & 2018 & 2019 & 2020 & 2021 & 2022 & 2023 & 2024 & 2025 & 2026 \\
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\midrule
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Visual Studio 10 & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{yellow} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & & \\
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GCC 4.2 & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{yellow} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & & & & & \\
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GCC 4.4 & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{yellow} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & \cellcolor{red} & & \\
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GCC 4.9 & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{itkTableCellGreen} & \cellcolor{yellow} & \cellcolor{red} \\
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\bottomrule
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\end{tabular}
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}
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\end{center}
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\itkcaption[ITK Compiler Support Timeline]{ITK Compiler Support Timeline.
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\label{tab:CompileSupportTimeline}}
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\end{table}
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\textbf{Legend}:
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\begin{table}[h]
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\begin{center}
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\begin{tabular}{l}
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\cellcolor{itkTableCellGreen}Fully supported \\
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\cellcolor{yellow}Phase out \\
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\cellcolor{red}If community supported \\
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\end{tabular}
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\end{center}
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\end{table}
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If you are currently using an outdated compiler this may be an excellent excuse
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for upgrading this old piece of software! Support for different platforms is
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evident on the ITK quality dashboard (see Section \ref{sec:CDash} on page

‎SoftwareGuide/Latex/Introduction/Introduction.tex

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materials, which provide cookbook recipes that concisely demonstrate how to
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achieve a given task, the Doxygen pages, which document the specific algorithm
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parameters, and the knowledge of the many ITK community members (see Section
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\ref{sec:AdditionalResources} on page \pageref{sec:AdditionalResources}.)
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\ref{sec:AdditionalResources} on page \pageref{sec:AdditionalResources}).
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The Insight Toolkit is an open-source software system. This means that the
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community surrounding ITK has a great impact on the evolution of the software.
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The key to learning how to use ITK is to become familiar with its palette of
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objects and the ways to combine them. There are three categories of
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documentation to help with the learning process: high level guidance material
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(the Software Guide), "cookbook" demonstrations on how to achieve concrete
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(the Software Guide), ``cookbook'' demonstrations on how to achieve concrete
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objectives (the examples), and detailed descriptions of the
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application programming interface (the
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Doxygen\footnote{\url{https://itk.org/Doxygen/index.html}} documentation). These
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resources are combined in the three recommended stages for learning ITK.
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In the first stage, thoroughly read this introduction, which provides an
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overview of some of the key concepts of the system. It also provides guidance
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on how to build and install the software. After running your first "hello
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world" program, you are well on your way to advanced computational image
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on how to build and install the software. After running your first ``hello
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world'' program, you are well on your way to advanced computational image
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analysis!
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The next stage is to execute a few examples and gain familiarity with the
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available documentation. By running the examples, one can gain confidence
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in achieving results and is introduced the mechanics of the software system.
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There are three example resources,
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There are two example resources,
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\begin{enumerate}
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\item the \code{Examples} directory of the ITK source code repository
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\footnote{See Section~\nameref{sec:DownloadingITK} on
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page~\pageref{sec:DownloadingITK})}.
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\item the Examples pages on the ITK Wiki \footnote{\url{https://itk.org/Wiki/ITK/Examples}}
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\item the Sphinx documented ITK Examples \footnote{\url{https://itk.org/ITKExamples}}
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\end{enumerate}
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To gain familiarity with the available documentation, browse the sections
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The \code{ITK} repository contains the following subdirectories:
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\begin{itemize}
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\item \code{ITK/Modules} --- the heart of the software; the location
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of the majority of the source code.
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\item \code{ITK/Documentation} --- migration guides and Doxygen infrastructure.
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\item \code{ITK/Examples} --- a suite of simple, well-documented
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examples used by this guide, illustrating important
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ITK concepts.
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\item \code{ITK/Testing} --- a collection of the MD5 files, which are
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used to link with the ITK data servers to download test data. This test data is
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used by tests in \code{ITK/Modules} to produce the ITK Quality Dashboard using
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CDash.
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\item \code{ITK/Modules} --- the heart of the software; the location
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of the majority of the source code.
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\item \code{ITK/Testing} --- a collection of the test files, including
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raw binary, and MD5 and SHA512 hash files, which are used to link
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with the ITK data servers to download test data. This test data is
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used by tests in \code{ITK/Modules} to produce the ITK Quality
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Dashboard using CDash.
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(see Section \ref{sec:CDash} on page \pageref{sec:CDash}.)
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\item \code{Insight/Utilities} --- the scripts that support source code development. For example, CTest and Doxygen support.
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\item \code{Insight/Wrapping} --- the wrapping code to build interfaces between the C++ library and various interpreted languages (currently Python is supported).
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\item \code{ITK/Utilities} --- the scripts that support source code
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development. For example, CTest and Doxygen support.
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\item \code{ITK/Wrapping} --- the wrapping code to build interfaces
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between the C++ library and various interpreted languages (currently
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Python is supported).
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\end{itemize}
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The source code directory structure---found in \code{ITK/Modules}---is
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the most important to understand.
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\begin{itemize}
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\item \code{ITK/Modules/Bridge} --- classes used to connect with the
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other analysis libraries or visualization libraries, such as
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OpenCV\footnote{\url{http://opencv.org}} and
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VTK\footnote{\url{http://www.vtk.org}}.
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\item \code{ITK/Modules/Compatibility} --- collects together classes
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for backwards compatibility with ITK Version 3, and classes that are
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deprecated -- i.e. scheduled for removal from future versions of ITK.
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\item \code{ITK/Modules/Core} --- core classes, macro definitions,
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type aliases, and other software constructs central to ITK. The classes
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in \code{Core} are the only ones always compiled as part of ITK.
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\item \code{ITK/Modules/ThirdParty} --- various third-party libraries
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that are used to implement image file I/O and mathematical algorithms.
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(Note: ITK's mathematical library is based
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on the VXL/VNL software
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package\footnote{\url{http://vxl.sourceforge.net}}.)
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\item \code{ITK/Modules/External} --- a directory to place in development
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or non-publicized modules.
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\item \code{ITK/Modules/Filtering} --- image processing filters.
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\item \code{ITK/Modules/IO} --- classes that support the reading
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and writing of images, transforms, and geometry.
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\item \code{ITK/Modules/Bridge} --- classes used to connect with the
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other analysis libraries or visualization libraries, such as
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OpenCV\footnote{\url{http://opencv.org}} and
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VTK\footnote{\url{http://www.vtk.org}}.
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\item \code{ITK/Modules/Numerics} --- a collection of numeric modules, including
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FEM, Optimization, Statistics, Neural Networks, etc.
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\item \code{ITK/Modules/Registration} --- classes for registration of
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images or other data structures to each other.
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\item \code{ITK/Modules/Remote} --- a group of modules distributed outside
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of the main ITK source repository (most of them are hosted on \url{github.com})
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whose source code can be downloaded via CMake when configuring ITK.
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\item \code{ITK/Modules/Segmentation} --- classes for segmentation of
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images or other data structures.
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\item \code{ITK/Modules/ThirdParty} --- various third-party libraries
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that are used to implement image file I/O and mathematical algorithms.
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(Note: ITK's mathematical library is based
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on the VXL/VNL software
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package\footnote{\url{https://vxl.github.io}}).
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\item \code{ITK/Modules/Video} --- classes for input, output and processing
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of static and real-time data with temporal components.
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\item \code{ITK/Modules/Compatibility} --- collects together classes
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for backwards compatibility with ITK Version 3, and classes that are
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deprecated -- i.e. scheduled for removal from future versions of ITK.
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\item \code{ITK/Modules/Remote} --- a group of modules distributed outside
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of the main ITK source repository (most of them are hosted on \url{github.com})
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whose source code can be downloaded via CMake when configuring ITK.
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\item \code{ITK/Modules/External} --- a directory to place in development
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or non-publicized modules.
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\item \code{ITK/Modules/Numerics} --- a collection of numeric modules, including
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FEM, Optimization, Statistics, Neural Networks, etc.
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\end{itemize}
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The Doxygen documentation is an essential resource when working with ITK, but

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