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lines changed Original file line number Diff line number Diff line change 1+ name : Create and publish a Docker image
2+
3+ on :
4+ release :
5+ types : [published]
6+ env :
7+ REGISTRY : ghcr.io
8+ IMAGE_NAME : ${{ github.repository }}
9+
10+ jobs :
11+ build-and-push-image :
12+ runs-on : ubuntu-latest
13+ permissions :
14+ contents : read
15+ packages : write
16+
17+ steps :
18+ - name : Checkout repository
19+ uses : actions/checkout@v4
20+
21+ - name : Log in to the Container registry
22+ uses : docker/login-action@v3
23+ with :
24+ registry : ${{ env.REGISTRY }}
25+ username : ${{ github.actor }}
26+ password : ${{ secrets.GITHUB_TOKEN }}
27+
28+ - name : Extract metadata (tags, labels) for Docker
29+ id : meta
30+ uses : docker/metadata-action@v4
31+ with :
32+ images : ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
33+ tags : |
34+ type=semver,pattern={{major}}.{{minor}}.{{patch}}
35+ type=semver,pattern={{major}}.{{minor}}
36+ type=semver,pattern={{major}}
37+
38+ - name : Build and push Docker image
39+ uses : docker/build-push-action@v6
40+ with :
41+ context : .
42+ push : true
43+ tags : ${{ steps.meta.outputs.tags }}
44+ labels : ${{ steps.meta.outputs.labels }}
45+ build-args : " PYBIOCLIP_VERSION=${{ steps.meta.outputs.version }}"
Original file line number Diff line number Diff line change 1+ FROM condaforge/miniforge3:24.3.0-0
2+
3+ # Pass -s to tini since apptainer doesn't run as PID 1
4+ ENTRYPOINT ["tini" , "-s" , "--" ]
5+
6+ ARG PYBIOCLIP_VERSION
7+
8+ # Install pybioclip from the release archive because pypi can take a while to start working.
9+ RUN pip install "https://github.com/Imageomics/pybioclip/archive/refs/tags/${PYBIOCLIP_VERSION}.tar.gz" && \
10+ pip cache purge
11+
12+ # Create a non-root user with a home directory to help cache pybioclip files
13+ RUN useradd -ms /bin/bash bcuser
14+ USER bcuser
15+ ENV PATH="$PATH:/home/bcuser/.local/bin"
16+ WORKDIR /home/bcuser
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