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size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size Homo sapiens reference genome mock extraction Homo sapiens reference genome mock library construction mock sequencing GCA_000001405.1 no ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1 yes ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size Homo sapiens reference genome mock extraction Homo sapiens reference genome mock library construction mock sequencing GCA_000001405.1 no ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size # S.aureus reference genome mock extraction S.aureus reference genome mock library construction mock sequencing NC_010079 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=161508266&extrafeat=0&maxplex=1 soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_1.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_2.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_1.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_2.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size S.aureus reference genome mock extraction S.aureus reference genome mock library construction mock sequencing NC_010079 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=161508266&extrafeat=0&maxplex=1 soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_1.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_2.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_1.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_2.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size S.aureus reference genome mock extraction S.aureus reference genome mock library construction mock sequencing NC_010079 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=161508266&extrafeat=0&maxplex=1 ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_1.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_2.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_1.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_2.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_2.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_2.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_2.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_2_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_1_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_2_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_1_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_2_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size \ No newline at end of file +Sample Name Protocol REF Extract Name Protocol REF Parameter Value[library source] Parameter Value[library strategy] Parameter Value[library selection] Parameter Value[library layout] Protocol REF Parameter Value[sequencing instrument] Assay Name Comment[Export] Raw Data File Protocol REF "Parameter Value[sequence assembly algorithm,http://purl.obolibrary.org/obo/OBI_0001522,OBI]" Term Source REF Term Accession Number Parameter Value[workflow engine] Term Source REF Term Accession Number Parameter Value[workflow] Term Source REF Term Accession Number Parameter Value[Galaxy history] Term Source REF Term Accession Number Parameter Value[Galaxy workflow file] Term Source REF Term Accession Number Data Transformation Name Derived Data File Comment[Derived Data File information] Protocol REF Data Transformation Name Derived Data File Factor Value[sequence assembly algorithm] Term Source REF Term Accession Number Factor Value[genome size] Term Source REF Term Accession Number assemblathon-bacteria mock extraction assemblathon-bacteria mock library construction mock sequencing assemblathon-bacteria no ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.fna.tar.gz soapdenovo2-sequence assembly SOAPdenovo version 2 Galaxy DT1 T1 http://www.gigasciencejournal.com/content/1/1/18/table/T1 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size assemblathon-bacteria mock extraction assemblathon-bacteria mock library construction mock sequencing assemblathon-bacteria no ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.fna.tar.gz soapdenovo1-sequence assembly SOAPdenovo version 1 Galaxy DT1 T1 http://www.gigasciencejournal.com/content/1/1/18/table/T1 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size assemblathon-bacteria mock extraction assemblathon-bacteria mock library construction mock sequencing assemblathon-bacteria no ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.fna.tar.gz ALLPATHS-LG-sequence assembly ALLPATHS-LG Galaxy DT1 T1 http://www.gigasciencejournal.com/content/1/1/18/table/T1 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Homo sapiens reference genome mock extraction Homo sapiens reference genome mock library construction mock sequencing GCA_000001405.1 no ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2.fq.gz soapdenovo2-h-sapiens-sequence assembly SOAPdenovo version 2 Galaxy DT4.Hs.SOAPdenovo2 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 large size Homo sapiens reference genome mock extraction Homo sapiens reference genome mock library construction mock sequencing GCA_000001405.1 no ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/bigZips/chromFa.tar.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1 yes ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L6_HUMiqvDBTDIBAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L7_HUMiqvDBTDBAAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L8_HUMiqvDBTDBABPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I125_FC81C7KABXX_L3_HUMiqvDBTDLAAPE_1 no 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HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_1.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110115_I270_FC81CBVABXX_L5_HUMiqvDBTDBCAPE_2.fq.gz soapdenovo1-h-sapiens-sequence assembly SOAPdenovo version 1 Galaxy DT4.Hs.SOAPdenovo1 T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 large size Homo sapiens reference genome mock extraction Homo 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HiSeq 2000 110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110112_I199_FC819BBABXX_L3_HUMiqvDBTDWAAPE_2.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid sequencing Illumina HiSeq 2000 110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1 no ftp://climb.genomics.cn/pub/10.5524/100001_101000/100038/data/110114_I481_FC81C7HABXX_L5_HUMiqvDBTDIAAPE_1.fq.gz ALLPATH-LG-h-sapiens-sequence assembly ALLPATHS-LG Galaxy DT4.Hs.ALLPATH-LG T4 http://www.gigasciencejournal.com/content/1/1/18/table/T4 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG large size YH nucleic acid extraction YH library construction GENOMIC OTHER OTHER PAIRED nucleic acid 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http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo1.ga DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_1.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo1.ga DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_2.fastq.gz soapdenovo1-s-aureus-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1 http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo1.ga DT2.Sa.SOAPdenovo1 http://gigagalaxy.net/datasets/61b51a387c27054a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 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http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_2.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo2.ga DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_1.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo2.ga DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_2.fastq.gz soapdenovo2-s-aureus-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_S._aureus_genome_using_SOAPdenovo2.ga DT2.Sa.SOAPdenovo2 http://gigagalaxy.net/datasets/241d84796a24640a http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size S.aureus reference genome mock extraction S.aureus reference genome mock library construction mock sequencing NC_010079 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=161508266&extrafeat=0&maxplex=1 ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-allpaths http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_S._aureus_genome_using_ALLPATHS.ga DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library1 mock library construction mock sequencing Staphylococcus_aureus-Library1 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/frag_1.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-allpaths http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_S._aureus_genome_using_ALLPATHS.ga DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction 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http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-allpaths http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_S._aureus_genome_using_ALLPATHS.ga DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Staphylococcus_aureus mock extraction Staphylococcus_aureus-Library2 mock library construction mock sequencing Staphylococcus_aureus-Library2 no http://gage.cbcb.umd.edu/data/Staphylococcus_aureus/Data.original/shortjump_2.fastq.gz ALLPATH-LG-s-aureus-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-allpaths http://gigagalaxy.net/u/peterli/h/s-aureus-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_S._aureus_genome_using_ALLPATHS.ga DT2.Sa.ALLPATH-LG http://gigagalaxy.net/datasets/a32a1d9364c1b029 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo1.ga DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo1.ga DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-r-sphaeroides-genome-assembly-using-soapdenovo1 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo1.ga DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz soapdenovo1-r-sphaeroides-sequence assembly SOAPdenovo version 1 Galaxy 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http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo1 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo1.ga DT2.Rs.SOAPdenovo1 http://gigagalaxy.net/datasets/a1b6cce8a2380c73 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo2.ga DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo2.ga DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz soapdenovo2-r-sphaeroides-sequence assembly SOAPdenovo version 2 Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-soapdenovo2 http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo2.ga DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz 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http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-soapdenovo2 Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_SOAPdenovo2.ga DT2.Rs.SOAPdenovo2 http://gigagalaxy.net/datasets/32d48e3506ae8cf7 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 small size R.spaeroides reference genome mock extraction R.spaeroides reference genome mock library construction mock sequencing CP000143 no http://www.ncbi.nlm.nih.gov/sviewer/viewer.fcgi?tool=portal&sendto=on&log$=seqview&db=nuccore&dopt=fasta&val=77386383&extrafeat=0&maxplex=1 ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-allpaths http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_ALLPATHS.ga DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_1.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-allpaths http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_ALLPATHS.ga DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library1 mock library construction mock sequencing Rhodobacter_sphaeroides-Library1 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/frag_2.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-allpaths http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_ALLPATHS.ga DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_1.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-allpaths http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_ALLPATHS.ga DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Rhodobacter_sphaeroides mock extraction Rhodobacter_sphaeroides-Library2 mock library construction mock sequencing Rhodobacter_sphaeroides-Library2 no http://gage.cbcb.umd.edu/data/Rhodobacter_sphaeroides/Data.original/shortjump_2.fastq.gz ALLPATH-LG-r-sphaeroides-sequence assembly ALLPATHS-LG Galaxy http://gigagalaxy.net/u/peterli/w/assembling-the-r-sphaeroides-genome-using-allpaths http://gigagalaxy.net/u/peterli/h/r-sphaeroides-genome-assembly-using-allpaths Galaxy-Workflow-Assembling_the_R._sphaeroides_genome_using_ALLPATHS.ga DT2.Rs.ALLPATH-LG http://gigagalaxy.net/datasets/eff20c5ba6bf6f87 http://www.gigasciencejournal.com/content/1/1/18/table/T2 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG small size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_1_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_2_sequence.txt.gz soapdenovo1-b-impatiens-sequence assembly SOAPdenovo version 1 Galaxy DT3.Bi.SOAPdenovo2 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 2 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_9_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_1_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library3 mock library construction mock sequencing Bombus_impatiens_Library3 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_2_2_sequence.txt.gz soapdenovo2-b-impatiens-sequence assembly SOAPdenovo version 2 Galaxy DT3.Bi.ALLPATH-LG T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs ALLPATH-LG medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_1.fastq.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library1 mock library construction mock sequencing Bombus_impatiens_Library1 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/frag_2.fastq.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock extraction Bombus_impatiens_Library2 mock library construction mock sequencing Bombus_impatiens_Library2 no http://gage.cbcb.umd.edu/data/Bombus_impatiens/Data.original/s_1_1_sequence.txt.gz ALLPATH-LG-b-impatiens-sequence assembly ALLPATHS-LG Galaxy DT3.Bi.SOAPdenovo1 T3 http://www.gigasciencejournal.com/content/1/1/18/table/T3 nanopublication Nanopub http://w3id.org/isa/soapdenovo2/nanopubs SOAPdenovo version 1 medium size Bombus_impatiens mock 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