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Galaxy-wfdesc.rdf
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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE rdf:RDF [
<!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
<!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
<!ENTITY owl "http://www.w3.org/2002/07/owl#" >
<!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
<!ENTITY xml "http://www.w3.org/XML/1998/namespace" >
<!ENTITY rdfg "http://www.w3.org/2004/03/trix/rdfg-1/" >
<!ENTITY ore "http://www.openarchives.org/ore/terms/" >
<!ENTITY ao "http://purl.org/ao/" >
<!ENTITY dcterms "http://purl.org/dc/terms/" >
<!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
<!ENTITY ro "http://purl.org/wf4ever/ro#" >
<!ENTITY wfprov "http://purl.org/wf4ever/wfprov#" >
<!ENTITY wfdesc "http://purl.org/wf4ever/wfdesc#" >
<!ENTITY wf4ever "http://purl.org/wf4ever/wf4ever#" >
<!ENTITY roterms "http://purl.org/wf4ever/roterms#" >
]>
<rdf:RDF xmlns=""
xmlns:rdf="&rdf;"
xmlns:rdfs="&rdfs;"
xmlns:owl="&owl;"
xmlns:xsd="&xsd;"
xmlns:xml="&xml;"
xmlns:rdfg="&rdfg;"
xmlns:ore="&ore;"
xmlns:ao="&ao;"
xmlns:dcterms="&dcterms;"
xmlns:foaf="&foaf;"
xmlns:ro="&ro;"
xmlns:wfprov="&wfprov;"
xmlns:wfdesc="&wfdesc;"
xmlns:wf4ever="&wf4ever;"
xmlns:roterms="&roterms;"
>
<wfprov:Artifact rdf:about="Inputs/saureus_A_L1_101bp180IS45X_1.fq">
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/raw_data_file/18" />
</wfprov:Artifact>
<wfprov:Artifact rdf:about="Inputs/saureus_A_L1_101bp180IS45X_2.fq">
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/raw_data_file/19" />
</wfprov:Artifact>
<wfprov:Artifact rdf:about="Inputs/saureus_B_L3_37bp3500IS45X_1.fq">
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/raw_data_file/20" />
</wfprov:Artifact>
<wfprov:Artifact rdf:about="Inputs/saureus_B_L3_37bp3500IS45X_2.fq">
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/raw_data_file/21" />
</wfprov:Artifact>
<wfprov:Artifact rdf:about="Inputs/saureus.fasta">
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/raw_data_file/17" />
</wfprov:Artifact>
<wfdesc:Workflow rdf:about="Workflows/Galaxy-Workflow-Workflow_constructed_from_history__reproduce_s.aureus_pipeline_.ga">
<rdfs:seeAlso rdf:resource="http://gigagalaxy.net/u/peterli/w/workflow-constructed-from-history-s-aureus-genome-assembly-using-soapdenovo1" />
<rdfs:seeAlso rdf:resource="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14" />
<rdfs:label>Galaxy workflow for reproducing Table 2 of SOAPdenovo paper</rdfs:label>
<dcterms:title>Galaxy workflow for reproducing Table 2 of SOAPdenovo paper</dcterms:title>
<rdfs:comment>Galaxy workflow for reproducing Table 2 of SOAPdenovo paper</rdfs:comment>
<dcterms:description>
Galaxy workflow for reproducing Table 2 of SOAPdenovo paper
</dcterms:description>
<wfdesc:hasWorkflowDefinition rdf:resource="http://www.myexperiment.org/workflows/4078.html" />
<wfdesc:hasWorkflowDefinition rdf:resource="http://gigagalaxy.net/u/peterli/w/assembling-the-s-aureus-genome-using-soapdenovo2"/>
<wfdesc:hasInput>
<wfdesc:Input>
<wfdesc:hasArtifact rdf:resource="Inputs/saureus_A_L1_101bp180IS45X_1.fq" />
<rdfs:label>Workflow input file for KmerFreq AR</rdfs:label>
</wfdesc:Input>
</wfdesc:hasInput>
<roterms:inputValue>
<roterms:inputValue>
<roterms:portName>KmerFreq AR/Library1/Forward FASTQ file</roterms:portName>
<roterms:resource rdf:resource="Inputs/saureus_A_L1_101bp180IS45X_1.fq"/>
</roterms:inputValue>
</roterms:inputValue>
<wfdesc:hasInput>
<wfdesc:Input>
<wfdesc:hasArtifact rdf:resource="Inputs/saureus_A_L1_101bp180IS45X_2.fq" />
<rdfs:label>Workflow input file for KmerFreq AR</rdfs:label>
</wfdesc:Input>
</wfdesc:hasInput>
<roterms:inputValue>
<roterms:inputValue>
<roterms:portName>KmerFreq AR/Library1/Reverse FASTQ file</roterms:portName>
<roterms:resource rdf:resource="Inputs/saureus_A_L1_101bp180IS45X_2.fq"/>
</roterms:inputValue>
</roterms:inputValue>
<wfdesc:hasInput>
<wfdesc:Input>
<wfdesc:hasArtifact rdf:resource="Inputs/saureus_B_L3_37bp3500IS45X_1.fq" />
<rdfs:label>Workflow input file for SOAPdenovo2</rdfs:label>
</wfdesc:Input>
</wfdesc:hasInput>
<roterms:inputValue>
<roterms:inputValue>
<roterms:portName>SOAPdenovo2/Library2/Forward FASTQ file</roterms:portName>
<roterms:resource rdf:resource="Inputs/saureus_B_L3_37bp3500IS45X_1.fq"/>
</roterms:inputValue>
</roterms:inputValue>
<wfdesc:hasInput>
<wfdesc:Input>
<wfdesc:hasArtifact rdf:resource="Inputs/saureus_B_L3_37bp3500IS45X_2.fq" />
<rdfs:label>Workflow input file for SOAPdenovo2</rdfs:label>
<rdfs:comment>TODO:Upload and share the data</rdfs:comment>
</wfdesc:Input>
</wfdesc:hasInput>
<roterms:inputValue>
<roterms:inputValue>
<roterms:portName>SOAPdenovo2/Library2/Reverse FASTQ file</roterms:portName>
<roterms:resource rdf:resource="Inputs/saureus_B_L3_37bp3500IS45X_2.fq"/>
</roterms:inputValue>
</roterms:inputValue>
<wfdesc:hasInput>
<wfdesc:Input>
<wfdesc:hasArtifact rdf:resource="Inputs/saureus.fasta" />
<rdfs:label>Workflow input file for GAGE/Reference genome file in FASTA format</rdfs:label>
</wfdesc:Input>
</wfdesc:hasInput>
<roterms:inputValue>
<roterms:inputValue>
<roterms:portName>GAGE/Reference genome file in FASTA format</roterms:portName>
<roterms:resource rdf:resource="Inputs/saureus.fasta"/>
</roterms:inputValue>
</roterms:inputValue>
<wfdesc:hasOutput>
<wfdesc:Output>
<wfdesc:hasArtifact rdf:resource="Outputs/gage.out.Tabular" />
<rdfs:label>Workflow output file</rdfs:label>
</wfdesc:Output>
</wfdesc:hasOutput>
</wfdesc:Workflow>
</rdf:RDF>