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soapdenovo2.rdf
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://w3id.org/isa/soapdenovo2#"
xml:base="http://w3id.org/isa/soapdenovo2"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:dcat="http://www.w3.org/ns/dcat#"
xmlns:prov="http://www.w3.org/ns/prov#"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:isaterms="http://purl.org/isaterms/">
<owl:Ontology rdf:about="http://w3id.org/isa/soapdenovo2">
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/obi.owl"/>
<owl:imports rdf:resource="http://purl.org/isaterms"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Datatypes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000053 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000053"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000056 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000056"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000087 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000087"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000219 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000219"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000293 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000293"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000295 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000295"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000299 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000299"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000312 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000312"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000846 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/OBI_0000846"/>
<!-- http://purl.obolibrary.org/obo/RO_0001000 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001000"/>
<!-- http://purl.org/isaterms/declares -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/declares"/>
<!-- http://purl.org/isaterms/describes -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/describes"/>
<!-- http://purl.org/isaterms/executes -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/executes"/>
<!-- http://purl.org/isaterms/has_factor_level -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_factor_level"/>
<!-- http://purl.org/isaterms/has_measurement -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_measurement"/>
<!-- http://purl.org/isaterms/has_member -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_member"/>
<!-- http://purl.org/isaterms/has_parameter_value -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_parameter_value"/>
<!-- http://purl.org/isaterms/has_part -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_part"/>
<!-- http://purl.org/isaterms/has_technology -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/has_technology"/>
<!-- http://purl.org/isaterms/is_defined_by -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/is_defined_by"/>
<!-- http://purl.org/isaterms/points_to -->
<owl:ObjectProperty rdf:about="http://purl.org/isaterms/points_to"/>
<!-- http://www.w3.org/1999/02/22-rdf-syntax-ns#type -->
<owl:ObjectProperty rdf:about="http://www.w3.org/1999/02/22-rdf-syntax-ns#type"/>
<!-- http://www.w3.org/ns/dcat#distribution -->
<owl:ObjectProperty rdf:about="http://www.w3.org/ns/dcat#distribution"/>
<!-- http://www.w3.org/ns/prov#wasDerivedFrom -->
<owl:ObjectProperty rdf:about="http://www.w3.org/ns/prov#wasDerivedFrom"/>
<!-- http://www.w3.org/ns/prov#wasGeneratedBy -->
<owl:ObjectProperty rdf:about="http://www.w3.org/ns/prov#wasGeneratedBy"/>
<!-- http://www.w3.org/ns/prov#wasUsedBy -->
<owl:ObjectProperty rdf:about="http://www.w3.org/ns/prov#wasUsedBy"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.org/isaterms/has_value -->
<owl:DatatypeProperty rdf:about="http://purl.org/isaterms/has_value"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- OBI -->
<owl:Class rdf:about="OBI"/>
<!-- PATO -->
<owl:Class rdf:about="PATO"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000002 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000002"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000005 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000005"/>
<!-- http://purl.obolibrary.org/obo/BFO_0000040 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/BFO_0000040"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000030 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000030"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000300 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000300"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000305 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000305"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000311 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000311"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000321 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000321"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000429 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000429"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000577 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000577"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000582 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000582"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000590 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000590"/>
<!-- http://purl.obolibrary.org/obo/NCBITaxon_9606 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000011 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000011"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000047 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000047"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000066 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000066"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000070 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000070"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000094 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000094"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000202 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000202"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000242 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000242"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000245 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000245"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000272 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000272"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000471 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000471"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000626 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000626"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000659 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000659"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000711 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000711"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000747 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000747"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000750 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000750"/>
<!-- http://purl.obolibrary.org/obo/OBI_0000785 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0000785"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001522 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001522"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001615 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001615"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001617 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001617"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001622 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001622"/>
<!-- http://purl.obolibrary.org/obo/OBI_0001872 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0001872"/>
<!-- http://purl.obolibrary.org/obo/OBI_0200000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0200000"/>
<!-- http://purl.obolibrary.org/obo/OBI_0500000 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500000"/>
<!-- http://purl.obolibrary.org/obo/OBI_0500014 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0500014"/>
<!-- http://purl.obolibrary.org/obo/OBI_0600013 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0600013"/>
<!-- http://purl.obolibrary.org/obo/OBI_0666667 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/OBI_0666667"/>
<!-- http://purl.obolibrary.org/obo/PATO_0000117 -->
<owl:Class rdf:about="http://purl.obolibrary.org/obo/PATO_0000117"/>
<!-- http://purl.org/isaterms/ISA_dataset -->
<owl:Class rdf:about="http://purl.org/isaterms/ISA_dataset"/>
<!-- http://purl.org/isaterms/ISAowl_distribution -->
<owl:Class rdf:about="http://purl.org/isaterms/ISAowl_distribution"/>
<!-- http://purl.org/isaterms/ISAtab_distribution -->
<owl:Class rdf:about="http://purl.org/isaterms/ISAtab_distribution"/>
<!-- http://purl.org/isaterms/assay_file -->
<owl:Class rdf:about="http://purl.org/isaterms/assay_file"/>
<!-- http://purl.org/isaterms/derived_data_file -->
<owl:Class rdf:about="http://purl.org/isaterms/derived_data_file"/>
<!-- http://purl.org/isaterms/description -->
<owl:Class rdf:about="http://purl.org/isaterms/description"/>
<!-- http://purl.org/isaterms/factor -->
<owl:Class rdf:about="http://purl.org/isaterms/factor"/>
<!-- http://purl.org/isaterms/factor_value -->
<owl:Class rdf:about="http://purl.org/isaterms/factor_value"/>
<!-- http://purl.org/isaterms/first_name -->
<owl:Class rdf:about="http://purl.org/isaterms/first_name"/>
<!-- http://purl.org/isaterms/investigation -->
<owl:Class rdf:about="http://purl.org/isaterms/investigation"/>
<!-- http://purl.org/isaterms/investigation_file -->
<owl:Class rdf:about="http://purl.org/isaterms/investigation_file"/>
<!-- http://purl.org/isaterms/last_name -->
<owl:Class rdf:about="http://purl.org/isaterms/last_name"/>
<!-- http://purl.org/isaterms/measurement -->
<owl:Class rdf:about="http://purl.org/isaterms/measurement"/>
<!-- http://purl.org/isaterms/parameter_value -->
<owl:Class rdf:about="http://purl.org/isaterms/parameter_value"/>
<!-- http://purl.org/isaterms/raw_data_file -->
<owl:Class rdf:about="http://purl.org/isaterms/raw_data_file"/>
<!-- http://purl.org/isaterms/study -->
<owl:Class rdf:about="http://purl.org/isaterms/study"/>
<!-- http://purl.org/isaterms/study_design -->
<owl:Class rdf:about="http://purl.org/isaterms/study_design"/>
<!-- http://purl.org/isaterms/study_file -->
<owl:Class rdf:about="http://purl.org/isaterms/study_file"/>
<!-- http://purl.org/isaterms/study_group_population -->
<owl:Class rdf:about="http://purl.org/isaterms/study_group_population"/>
<!-- http://purl.org/isaterms/technology -->
<owl:Class rdf:about="http://purl.org/isaterms/technology"/>
<!-- http://purl.org/isaterms/title -->
<owl:Class rdf:about="http://purl.org/isaterms/title"/>
<!-- http://www.w3.org/ns/prov#Activity -->
<owl:Class rdf:about="http://www.w3.org/ns/prov#Activity"/>
<!-- http://www.w3.org/ns/prov#Entity -->
<owl:Class rdf:about="http://www.w3.org/ns/prov#Entity"/>
<!-- http://www.w3.org/ns/prov#Person -->
<owl:Class rdf:about="http://www.w3.org/ns/prov#Person"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://orcid.org/0000-0001-6444-1436 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0001-6444-1436">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Scott Edmunds [email protected]</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-6444-1436</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:OBI_0000846 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_affiliation/1"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/1"/>
</owl:NamedIndividual>
<!-- http://orcid.org/0000-0001-9602-9550 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0001-9602-9550">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Peter Li [email protected]</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9602-9550</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/4"/>
</owl:NamedIndividual>
<!-- http://orcid.org/0000-0001-9711-6533 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0001-9711-6533">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Ruibang Luo </rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9711-6533</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:OBI_0000846 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_affiliation/2"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/2"/>
</owl:NamedIndividual>
<!-- http://orcid.org/0000-0001-9853-5668 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0001-9853-5668">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Philippe Rocca-Serra [email protected]</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0001-9853-5668</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/6"/>
</owl:NamedIndividual>
<!-- http://orcid.org/0000-0003-3499-8262 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0003-3499-8262">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alejandra Gonzalez-Beltran [email protected]</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0003-3499-8262</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:OBI_0000846 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_affiliation/4"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/5"/>
</owl:NamedIndividual>
<!-- http://orcid.org/0000-0003-4676-8587 -->
<owl:NamedIndividual rdf:about="http://orcid.org/0000-0003-4676-8587">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9606"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Person"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Tak-Wah Lam [email protected]</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://orcid.org/0000-0003-4676-8587</rdfs:comment>
<obo:BFO_0000056 rdf:resource="http://w3id.org/isa/soapdenovo2/study/3"/>
<obo:OBI_0000846 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_affiliation/3"/>
<obo:BFO_0000087 rdf:resource="http://w3id.org/isa/soapdenovo2/study_person_roles/3"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/11 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/11">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0666667"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mock extraction</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:nucleic acid extraction</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/11</rdfs:comment>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/38"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/12 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/12">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0666667"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nucleic acid extraction</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:nucleic acid extraction</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/12</rdfs:comment>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/34"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/13 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/13">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000711"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mock library construction</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:library preparation</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/13</rdfs:comment>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/39"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000711"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">library construction</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:library preparation</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14</rdfs:comment>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/5"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/6"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/7"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/35"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/15 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/15">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">mock sequencing</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/15</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nucleic acid sequencing</rdfs:comment>
<obo:BFO_0000062 rdf:resource="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/13"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/40"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/16 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/16">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nucleic acid sequencing</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/16</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">nucleic acid sequencing</rdfs:comment>
<obo:BFO_0000062 rdf:resource="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/14"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/8"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/36"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/17 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/17">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo2-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/17</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/5"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/9"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/18"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/18 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/18">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo1-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/18</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/5"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/11"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/19"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/19 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/19">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ALLPATHS-LG-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/19</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/5"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/12"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/20"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/20 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/20">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo2-h-sapiens-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/20</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/6"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/9"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/22"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/21 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/21">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo1-h-sapiens-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/21</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/7"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/11"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/21"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/22 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/22">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ALLPATH-LG-h-sapiens-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/22</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/8"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/12"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/23"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/23 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/23">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo1-s-aureus-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/23</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/9"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/11"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/13"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/14"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/15"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/27"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/24 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/24">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo2-s-aureus-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/24</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/16"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/17"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/18"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/9"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/28"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/25 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/25">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ALLPATH-LG-s-aureus-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">http://w3id.org/isa/soapdenovo2/assay_protocol_ref/25</rdfs:comment>
<owl:sameAs rdf:resource="http://w3id.org/isa/soapdenovo2/data_transformation/11"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/10"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/12"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/19"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/20"/>
<isaterms:has_parameter_value rdf:resource="http://w3id.org/isa/soapdenovo2/parameter_value/21"/>
<isaterms:executes rdf:resource="http://w3id.org/isa/soapdenovo2/study_protocol/29"/>
</owl:NamedIndividual>
<!-- http://w3id.org/isa/soapdenovo2/assay_protocol_ref/26 -->
<owl:NamedIndividual rdf:about="http://w3id.org/isa/soapdenovo2/assay_protocol_ref/26">
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0000011"/>
<rdf:type rdf:resource="http://purl.obolibrary.org/obo/OBI_0001872"/>
<rdf:type rdf:resource="http://www.w3.org/ns/prov#Activity"/>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">soapdenovo1-r-sphaeroides-sequence assembly</rdfs:label>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">OBI:sequence assembly process</rdfs:comment>