diff --git a/data/phylogeny.tsv b/data/phylogeny.tsv index 0a2ef9c..0c45196 100644 --- a/data/phylogeny.tsv +++ b/data/phylogeny.tsv @@ -9,3 +9,11 @@ subclone parent color branchLength patient 6 1 #fdbf6f 1651 P2 7 6 #fb9a99 137 P2 8 4 #bbbb77 462 P2 +1 #cccccc 4961 P3 +2 1 #a6cee3 239 P3 +4 5 #cab2d6 437 P3 +5 10 #ff99ff 1802 P3 +6 9 #fdbf6f 979 P3 +9 10 #cf8d30 223 P3 +10 1 #41ae76 314 P3 +11 9 #ff7f00 117 P3 diff --git a/data/samples.tsv b/data/samples.tsv index 3cd5b66..9f0b373 100644 --- a/data/samples.tsv +++ b/data/samples.tsv @@ -6,3 +6,7 @@ P1_pPer1_DNA1 pPer1 1 P1 P2_iOme2_DNA1 iOme2 5 P2_pOme2_DNA1 P2 P2_iOvaR1_DNA1 iOvaR1 5 P2 P2_pOme2_DNA1 pOme2 1 P2 +P3_pAsc_DNA1 pAsc 1 P3 +P3_pPer1_DNA pPer1 1 P3 +P3_r2Asc_DNA r2Asc 11 P3_rAsc_DNA4 P3 +P3_rAsc_DNA4 rAsc 9 P3_pAsc_DNA1 P3 diff --git a/data/subclones.tsv b/data/subclones.tsv index e88f8bc..43ea80f 100644 --- a/data/subclones.tsv +++ b/data/subclones.tsv @@ -17,3 +17,18 @@ P2_pOme2_DNA1 5 0.309 P2 P2_iOvaR1_DNA1 6 0.3105 P2 P2_iOvaR1_DNA1 7 0.665 P2 P2_pOme2_DNA1 8 0.5195 P2 +P3_pPer1_DNA 1 0.1695 P3 +P3_rAsc_DNA4 1 0.054 P3 +P3_pAsc_DNA1 2 0.318 P3 +P3_rAsc_DNA4 2 0.033 P3 +P3_r2Asc_DNA 4 0.95 P3 +P3_r2Asc_DNA 5 0.034 P3 +P3_rAsc_DNA4 5 0.2935 P3 +P3_rAsc_DNA4 6 0.2325 P3 +P3_pAsc_DNA1 9 0.244 P3 +P3_pPer1_DNA 9 0.3165 P3 +P3_rAsc_DNA4 9 0.2945 P3 +P3_rAsc_DNA4 10 0.072 P3 +P3_pAsc_DNA1 11 0.435 P3 +P3_pPer1_DNA 11 0.5145 P3 +P3_rAsc_DNA4 11 0.021 P3 diff --git a/docs/example.svg b/docs/example.svg index 68f088f..eab945b 100644 --- a/docs/example.svg +++ b/docs/example.svg @@ -1 +1,43 @@ -Inferred rootpAscpPer1rAscr2Asc1245691011 + + + Subclone: 1 +Clonal prevalence: 0.250 +Cancer cell fraction: 1.000Subclone: 10 +Clonal prevalence: 0.250 +Cancer cell fraction: 0.750Subclone: 9 +Clonal prevalence: 0.250 +Cancer cell fraction: 0.500Subclone: 11 +Clonal prevalence: 0.250 +Cancer cell fraction: 0.250Inferred rootSubclone: 1 +Clonal prevalence: 0.000 +Cancer cell fraction: 0.997Subclone: 2 +Clonal prevalence: 0.318 +Cancer cell fraction: 0.318Subclone: 9 +Clonal prevalence: 0.244 +Cancer cell fraction: 0.679Subclone: 11 +Clonal prevalence: 0.435 +Cancer cell fraction: 0.435Sample takenpAscSubclone: 1 +Clonal prevalence: 0.170 +Cancer cell fraction: 1.000Subclone: 9 +Clonal prevalence: 0.317 +Cancer cell fraction: 0.831Subclone: 11 +Clonal prevalence: 0.514 +Cancer cell fraction: 0.514pPer1Subclone: 1 +Clonal prevalence: 0.054 +Cancer cell fraction: 1.000Subclone: 2 +Clonal prevalence: 0.033 +Cancer cell fraction: 0.033Subclone: 10 +Clonal prevalence: 0.072 +Cancer cell fraction: 0.913Subclone: 5 +Clonal prevalence: 0.293 +Cancer cell fraction: 0.293Subclone: 9 +Clonal prevalence: 0.294 +Cancer cell fraction: 0.548Subclone: 6 +Clonal prevalence: 0.233 +Cancer cell fraction: 0.233Subclone: 11 +Clonal prevalence: 0.021 +Cancer cell fraction: 0.021rAscSubclone: 5 +Clonal prevalence: 0.034 +Cancer cell fraction: 0.984Subclone: 4 +Clonal prevalence: 0.950 +Cancer cell fraction: 0.950r2AscBranch length: 49611Branch length: 2392Branch length: 31410Branch length: 2239Branch length: 11711Branch length: 9796Branch length: 18025Branch length: 4374Subclone100100010000Variants \ No newline at end of file