This might be caused by recursion over very long tuples or argument lists.

[RuiXiang09]

Hello, I have a question about CellScopes.jl. I am using Julia 1.9, and when running the function hd = cs.normalize_object(hd; scale_factor = 10000), I encountered the following issue:

SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}, SparseArrays.SparseVector{Float64, Int64}).

This might be caused by recursion over very long tuples or argument lists.

It seems to be stuck in a loop. Could you please provide me with some suggestions? Thank you very much!

[HaojiaWu]

Can you try reinstalling CellScopes in Julia 1.10.4 to see if that solves the error? I primarily maintain the development version now, as older versions have numerous dependency issues reported by users likely due to Julia's rapid update cycle. I am planning to release CellScopes V2 and merge it into the main branch in two months or so. For now, you can try the following (assuming you are on a Linux server):

In Terminal:

wget https://julialang-s3.julialang.org/bin/linux/x64/1.10/julia-1.10.4-linux-x86_64.tar.gz
tar xvf julia-1.10.4-linux-x86_64.tar.gz
# export julia to your path

In Julia:

using Pkg
Pkg.add(PackageSpec(url="https://github.com/bicycle1885/Leiden.jl"))
Pkg.add(PackageSpec(url="https://github.com/HaojiaWu/CellScopes.jl", rev="dev"))

[RuiXiang09]

Thank you for your reply. After updating to the new version of the package, my issue has been resolved. I look forward to using Cellscope V2.