Update DEA Tools dependency (#147)

* Update DEA Tools dependency

* Fix min bounds

* Test precommit

* Test precommit

* Test precommit

* Add precommit

* Test precommit

* Test precommit

* Update lockfile

* Test precommit

* Test precommit

* Make sure tests run on pyproject.toml

* Automatically update integration test validation results

---------

Co-authored-by: robbibt <robbibt@users.noreply.github.com>

Author: robbibt

.github/workflows/dea-intertidal-image.yml

@@ -14,8 +14,8 @@ on:
       - 'tests/**'
       - '.github/workflows/dea-intertidal-image.yml'
       - 'Dockerfile'
-      - 'requirements.in'
-      - 'setup.py'
+      - 'pyproject.toml'
+      - 'uv.lock'
       - 'codecov.yaml'
 
   pull_request:
@@ -27,8 +27,8 @@ on:
       - 'tests/**'
       - '.github/workflows/dea-intertidal-image.yml'
       - 'Dockerfile'
-      - 'requirements.in'
-      - 'setup.py'
+      - 'pyproject.toml'
+      - 'uv.lock'
       - 'codecov.yaml'
 
   release:
@@ -77,7 +77,7 @@ jobs:
           echo "PGPORT=5432" >> $GITHUB_ENV
           echo "PGHOST=localhost" >> $GITHUB_ENV
 
-      - name: Build DEA Intertidal docker image 
+      - name: Build DEA Intertidal docker image
         timeout-minutes: 30
         shell: bash
         run: |
@@ -122,7 +122,7 @@ jobs:
         with:
           message: |
             ![](https://github.com/GeoscienceAustralia/dea-intertidal/blob/${{ github.head_ref }}/tests/validation.jpg?raw=true")
-            
+
             For full integration test results, refer to the [Tests directory README](https://github.com/GeoscienceAustralia/dea-intertidal/tree/${{ github.head_ref }}/tests).
 
       - name: Upload coverage reports to Codecov

.pre-commit-config.yaml

@@ -0,0 +1,21 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: "v4.4.0"
+    hooks:
+      - id: check-case-conflict
+      - id: check-merge-conflict
+      - id: check-toml
+      - id: check-yaml
+      - id: end-of-file-fixer
+      - id: trailing-whitespace
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.12.9"
+    hooks:
+      - id: ruff-check # Run linter using pyproject.toml config
+      - id: ruff-format # Run formatter using pyproject.toml config
+
+  - repo: https://github.com/astral-sh/uv-pre-commit
+    rev: "0.8.11"
+    hooks:
+      - id: uv-lock

pyproject.toml

@@ -39,7 +39,7 @@ requires-python = ">=3.10,<4.0"
 dependencies = [
     "Bottleneck>=1.4.2",
     "click>=8.1.7",
-    "dea-tools==0.4.6.dev3",  # temporarily pin specific version of DEA Tools for Numpy 2.0 compatability
+    "dea-tools>=0.4.6",
     "eo-tides>=0.8.3",
     "folium>=0.16.0",
     "geopandas>=0.14.4",
@@ -83,8 +83,9 @@ dev = [
     "awscli>=1.38.1",
     "botocore>=1.37.1",
     "mdutils>=1.6.0",
+    "pre-commit>=0.2.0",
     "pytest>=6.0.0",
-    "pytest-dependency>=0.6.0", 
+    "pytest-dependency>=0.6.0",
     "pytest-cov>=6.0.0",
     "deptry>=0.20.0",
     "ruff>=0.1.0",
@@ -158,4 +159,4 @@ source = ["intertidal"]
 DEP002 = [
     "pyogrio",             # used to speed up data loading
     "odc-ui",              # ignore odc.ui not being recognised as `odc-ui`
-]
+]

tests/README.md

@@ -10,7 +10,7 @@ Integration tests
 
 This directory contains tests that are run to verify that DEA Intertidal code runs correctly. The ``test_intertidal.py`` file runs a small-scale full workflow analysis over an intertidal flat in the Gulf of Carpentaria using the DEA Intertidal [Command Line Interface (CLI) tools](../notebooks/Intertidal_CLI.ipynb), and compares these results against a LiDAR validation DEM to produce some simple accuracy metrics.
 
-The latest integration test completed at **2025-09-24 17:19**. Compared to the previous run, it had an:
+The latest integration test completed at **2025-09-25 15:15**. Compared to the previous run, it had an:
 - RMSE accuracy of **0.14 m ( :heavy_minus_sign: no change)**
 - MAE accuracy of **0.12 m ( :heavy_minus_sign: no change)**
 - Bias of **0.12 m ( :heavy_minus_sign: no change)**

tests/validation.csv

@@ -132,3 +132,4 @@ time,Correlation,RMSE,MAE,R-squared,Bias,Regression slope
 2025-09-24 06:00:07.113646+00:00,0.975,0.145,0.122,0.95,0.116,1.121
 2025-09-24 06:17:15.044540+00:00,0.975,0.145,0.122,0.95,0.116,1.121
 2025-09-24 07:19:12.704574+00:00,0.975,0.145,0.122,0.95,0.116,1.121
+2025-09-25 05:15:37.048163+00:00,0.975,0.145,0.122,0.95,0.116,1.121