README.md

Gene Set Enrichment Analysis (GSEA) 🏔️

This is the new GSEA. Built from scratch. It runs 1,000 times faster, delivers 99% more accurate results, and creates beautiful plots. It’s amazing!

Get started

gsea --help

Run the sarcopenia example

gsea metric-rank \
  ~/Downloads \
  example/sarcopenia/target.tsv \
  example/sarcopenia/data.tsv \
  example/sarcopenia/set.json \
  --number-of-permutations 10 \
  --more-plots "WP_DNA_MISMATCH_REPAIR;WP_CELL_CYCLE"

Convert older file formats (.cls, .gct, and .gmt) to .tsv and .json

gsea cls ~/Downloads/1.tsv data/1.cls

gsea gct ~/Downloads/1.tsv data/1.gct

gsea gmt ~/Downloads/12.json data/1.gmt data/2.gmt

Install

We plan to sign this app for macOS soon. In the meantime, enable third-party apps.

Download and extract the latest release.

PATH=$(pwd)/gsea/bin:$PATH

Build

cd test

julia --project ../deps/build.jl app tarball

Contact us

If you have any questions, issues, or concerns, feel free to open a GitHub issue.

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Made by Kata 🥋