Hot fix release for AgroPortal compatibiliy (#1670)

Author: matentzn

envo-base.owl

@@ -14,14 +14,13 @@
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
      xmlns:skos="http://www.w3.org/2004/02/skos/core#"
      xmlns:chebi="http://purl.obolibrary.org/obo/chebi#"
-     xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:schema="http://schema.org/"
      xmlns:taxslim="http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.obo#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
      xmlns:process_attribute="http://purl.obolibrary.org/obo/envo-p/patterns/process_attribute/">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/envo/envo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2025-10-20/envo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/envo/releases/2026-06-26/envo-base.owl"/>
         <dc:contributor rdf:resource="https://orcid.org/0000-0002-2996-719X"/>
         <dc:creator rdf:resource="https://orcid.org/0000-0002-4366-3088"/>
         <dc:creator>http://orcid.org/0000-0002-6601-2165</dc:creator>
@@ -39,7 +38,7 @@
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_attribute_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 168 Logical Axioms: 29]</rdfs:comment>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/entity_quality_location.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 40 Logical Axioms: 6]</rdfs:comment>
         <rdfs:comment>Includes Ontology(OntologyID(OntologyIRI(&lt;http://purl.obolibrary.org/obo/envo/modules/process_attribute.owl&gt;) VersionIRI(&lt;null&gt;))) [Axioms: 21 Logical Axioms: 2]</rdfs:comment>
-        <owl:versionInfo>2025-10-20</owl:versionInfo>
+        <owl:versionInfo>2026-06-26</owl:versionInfo>
         <foaf:homepage rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">http://environmentontology.org/</foaf:homepage>
     </owl:Ontology>
 
@@ -3262,7 +3261,7 @@
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00000018">
         <obo:IAO_0000115>A river that has either permanently or temporally lost its water.</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</obo:IAO_0100001>
+        <obo:IAO_0100001>ENVO:01000995</obo:IAO_0100001>
         <oboInOwl:hasOBONamespace>ENVO</oboInOwl:hasOBONamespace>
         <oboInOwl:id>ENVO:00000018</oboInOwl:id>
         <rdfs:label>obsolete dry river</rdfs:label>
@@ -14415,7 +14414,7 @@ which ended up making incorrect inference. We chose to obsolete this now.</obo:I
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00000227">
         <obo:IAO_0000115>An estuary whose river output is less than the marine input. Here, turbulence causes mixing of the whole water column, such that salinity varies more longitudinally rather than vertically.</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:resource="ENVO:00000224"/>
+        <obo:IAO_0100001>ENVO:00000224</obo:IAO_0100001>
         <rdfs:label>obsolete vertically mixed estuary</rdfs:label>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
     </owl:Class>
@@ -19775,7 +19774,7 @@ SOURCE DEFINITION: Marine brine pools are large areas of brine on the ocean basi
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00000373">
         <obo:IAO_0000115>An area where wells can be drilled to obtain elements contained in solution in hot brines or to tap heat energy.</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:resource="ENVO:01001851"/>
+        <obo:IAO_0100001>ENVO:01001851</obo:IAO_0100001>
         <rdfs:label>obsolete geothermal field</rdfs:label>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
     </owl:Class>
@@ -28105,7 +28104,7 @@ The lower boundary that separates soil from the nonsoil underneath is most diffi
     <!-- http://purl.obolibrary.org/obo/ENVO_00002041 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00002041">
-        <obo:IAO_0100001 rdf:resource="ENVO:01001004"/>
+        <obo:IAO_0100001>ENVO:01001004</obo:IAO_0100001>
         <oboInOwl:hasDbXref>EcoLexicon:groundwater</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>LTER:235</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>SWEETRealm:Groundwater</oboInOwl:hasDbXref>
@@ -36025,7 +36024,7 @@ Liming can also improve aggregate stability on clay soils. For this purpose stru
     <!-- http://purl.obolibrary.org/obo/ENVO_00005785 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_00005785">
-        <obo:IAO_0100001 rdf:resource="ENVO:01001841"/>
+        <obo:IAO_0100001>ENVO:01001841</obo:IAO_0100001>
         <oboInOwl:hasDbXref>https://en.wikipedia.org/wiki/Volcanic_soil</oboInOwl:hasDbXref>
         <rdfs:comment>Incorrect equivalence axiom.</rdfs:comment>
         <rdfs:label>obsolete volcanic soil</rdfs:label>
@@ -45483,7 +45482,7 @@ From https://en.wikipedia.org/wiki/ [A mineral] is different from a rock, which
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01000261">
         <obo:IAO_0000115>A cline within a marine water body where the rate of calcite dissolution changes rapidly with depth. The increase in the rate of calcite dissolution with depth is largely due to the concomitant fall in calcite saturation.</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:resource="ENVO:01000079"/>
+        <obo:IAO_0100001>ENVO:01000079</obo:IAO_0100001>
         <oboInOwl:created_by>ORCID:0000-0002-4366-3088</oboInOwl:created_by>
         <oboInOwl:creation_date>2013-10-06T20:16:10Z</oboInOwl:creation_date>
         <rdfs:label>obsolete lysocline</rdfs:label>
@@ -49217,7 +49216,7 @@ The relationship between this &quot;forest&quot; class and the mangrove swamp mu
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01000404">
         <obo:IAO_0000115>OBSOLETE A (portion of) plastic is an (portion of) anthropogenic environmental material including any of numerous organic synthetic or processed materials which are primarily composed of thermoplastic or thermosetting polymers of high molecular weight.</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:resource="ENVO:06105112"/>
+        <obo:IAO_0100001>ENVO:06105112</obo:IAO_0100001>
         <rdfs:comment>This term has been replaced by &quot;synthetic plastic&quot; as part of a more coherent set of classes as part of the SDG14.1.1 project (see https://github.com/EnvironmentOntology/envo/projects/17)</rdfs:comment>
         <rdfs:label>obsolete manufactured plastic</rdfs:label>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
@@ -72265,7 +72264,6 @@ Emeritus Professor of Biology.</rdfs:comment>
         <oboInOwl:hasDbXref>EcoLexicon:canopy</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>LTER:82</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>SWEETRealm:Canopy</oboInOwl:hasDbXref>
-        <rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">false</rdfs:comment>
         <rdfs:label xml:lang="en">canopy</rdfs:label>
     </owl:Class>
     <owl:Axiom>
@@ -76705,7 +76703,7 @@ Emeritus Professor of Biology.</rdfs:comment>
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/ENVO_01001387">
         <obo:IAO_0000115>An oceanic mussel reef which is primarily settled by mussels of the genus Bathymodiolus and primarily composed of self-adhered or conglomerated mussel shells</obo:IAO_0000115>
-        <obo:IAO_0100001 rdf:resource="ENVO:01001390"/>
+        <obo:IAO_0100001>ENVO:01001390</obo:IAO_0100001>
         <oboInOwl:created_by rdf:resource="https://orcid.org/0000-0002-4366-3088"/>
         <rdfs:label>obsolete Bathymodiolus-dominated oceanic mussel bed</rdfs:label>
         <owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>