Some updates on hite

Author: FernandoDuarteF

conf/base.config

@@ -79,5 +79,10 @@ process {
        cpus   = { 8     * task.attempt } 
     }
 
+    withName:'HITE' {
+       cpus   = { 8     * task.attempt }
+       memory = { 12.GB * task.attempt }
+       time   = { 10.h  * task.attempt }
+    }
 
 }

conf/modules.config

@@ -294,6 +294,7 @@ process {
 
     withName: 'HITE' {
         ext.args = '--annotate 1'
+        cache    = !params.hite_disable_cache
         publishDir = [
             path: { "${params.outdir}/hite" },
             mode: params.publish_dir_mode,

nextflow.config

@@ -69,6 +69,7 @@ params {
 
     // HiTE
     run_hite                   = false
+    hite_disable_cache         = false
 
     // MultiQC options
     multiqc_config             = null

workflows/genomeqc.nf

@@ -188,6 +188,7 @@ workflow GENOMEQC {
             []
         )
     }
+    ch_versions = ch_versions.mix(FASTA_EXPLORE_SEARCH_PLOT_TIDK.out.versions.first())
 
     // Merqury: Evaluate genome assemblies with k-mers and more
     // https://github.com/marbl/merqury