putting download at top and increasing max time to test

Author: alexandriai168

.github/workflows/lc_fticr_workflow_tests.yaml

@@ -17,16 +17,16 @@ jobs:
       with:
         python-version: '3.8'
 
-    - name: Install Docker
-      run: |
-        curl -fsSL https://get.docker.com -o get-docker.sh
-        sh get-docker.sh
-        sudo usermod -aG docker $USER
-
-    - name: Install MiniWDL
-      run: |
-        python -m pip install --upgrade pip
-        pip install miniwdl
+    # - name: Install Docker
+    #   run: |
+    #     curl -fsSL https://get.docker.com -o get-docker.sh
+    #     sh get-docker.sh
+    #     sudo usermod -aG docker $USER
+
+    # - name: Install MiniWDL
+    #   run: |
+    #     python -m pip install --upgrade pip
+    #     pip install miniwdl
 
     - name: Download LC-FTICR database and test data
       run: |

Makefile

@@ -120,7 +120,7 @@ get-lcms-fticr-test-data:
 	@echo "Checking if test data file exists"
 	@if [ ! -f ./data/raw_data/lc_fticr/20231109_60885_SRFA_50ppm_5uL_LC_PolarAdv-001262_231109183242.raw ]; \
 	then echo "Test data file does not exist, downloading"; \
-	curl -fL --retry 5 --retry-delay 10 --max-time 120 -O --output-dir data/raw_data/lc_fticr/ https://nmdcdemo.emsl.pnl.gov/nom/test_data/enviroms_lcms_nom_test/20231109_60885_SRFA_50ppm_5uL_LC_PolarAdv-001262_231109183242.raw; \
+	curl -fL --retry 3 --retry-delay 10 --max-time 500 -O --output-dir data/raw_data/lc_fticr/ https://nmdcdemo.emsl.pnl.gov/nom/test_data/enviroms_lcms_nom_test/20231109_60885_SRFA_50ppm_5uL_LC_PolarAdv-001262_231109183242.raw; \
 	else echo "Test data file exists"; fi
 
 	# download ref