add opentargets to impc x gwas subgraph

jamesamcl · jamesamcl · commit 4dc538fcc010 · 2025-02-12T15:39:34.000Z
diff --git a/dataload/configs/subgraph_configs/impc_x_gwas.json b/dataload/configs/subgraph_configs/impc_x_gwas.json
@@ -30,7 +30,8 @@
     "mondo:0000001",
     "efo:0000408",
     "chebi:36080",
-    "chebi:24431"
+    "chebi:24431",
+    "biolink:ChemicalEntity"
   ],
   "additional_equivalence_groups": [
     [
@@ -139,6 +140,7 @@
     "./configs/datasource_configs/ols.yaml",
     "./configs/datasource_configs/mondo_efo.yaml",
     "./configs/datasource_configs/monarch.yaml",
-    "./configs/datasource_configs/sssom.yaml"
+    "./configs/datasource_configs/sssom.yaml",
+    "./configs/datasource_configs/otar.yaml"
   ]
 }
diff --git a/dataload/configs/subgraph_configs/src/impc_x_gwas.py b/dataload/configs/subgraph_configs/src/impc_x_gwas.py
@@ -10,7 +10,8 @@
     "./configs/datasource_configs/ols.yaml",
     "./configs/datasource_configs/mondo_efo.yaml",
     "./configs/datasource_configs/monarch.yaml",
-    "./configs/datasource_configs/sssom.yaml"
+    "./configs/datasource_configs/sssom.yaml",
+    "./configs/datasource_configs/otar.yaml"
 ]
 
 if __name__ == '__main__':

Original file line number	Diff line number	Diff line change
`@@ -30,7 +30,8 @@`
`30`	`30`	`"mondo:0000001",`
`31`	`31`	`"efo:0000408",`
`32`	`32`	`"chebi:36080",`
`33`		`- "chebi:24431"`
	`33`	`+ "chebi:24431",`
	`34`	`+ "biolink:ChemicalEntity"`
`34`	`35`	`],`
`35`	`36`	`"additional_equivalence_groups": [`
`36`	`37`	`[`
`@@ -139,6 +140,7 @@`
`139`	`140`	`"./configs/datasource_configs/ols.yaml",`
`140`	`141`	`"./configs/datasource_configs/mondo_efo.yaml",`
`141`	`142`	`"./configs/datasource_configs/monarch.yaml",`
`142`		`- "./configs/datasource_configs/sssom.yaml"`
	`143`	`+ "./configs/datasource_configs/sssom.yaml",`
	`144`	`+ "./configs/datasource_configs/otar.yaml"`
`143`	`145`	`]`
`144`	`146`	`}`
Original file line number	Diff line number	Diff line change
`@@ -10,7 +10,8 @@`
`10`	`10`	`"./configs/datasource_configs/ols.yaml",`
`11`	`11`	`"./configs/datasource_configs/mondo_efo.yaml",`
`12`	`12`	`"./configs/datasource_configs/monarch.yaml",`
`13`		`- "./configs/datasource_configs/sssom.yaml"`
	`13`	`+ "./configs/datasource_configs/sssom.yaml",`
	`14`	`+ "./configs/datasource_configs/otar.yaml"`
`14`	`15`	`]`
`15`	`16`
`16`	`17`	`if __name__ == '__main__':`