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README.md

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MP2RAGE scripts

  • T1 maps estimation using the MP2RAGE sequence
  • T1 map correction using an additional B1 map
  • Background noise removal by using a "robust"/regularized version of the combination of the two inversion time images

These functions can be called with BIDS-wrappers (the functions named bids_*) to automatically process BIDS data repositories

Installation

In the Environment tab of the Matlab window, click on Add-ons > Get Add-ons and search for "MP2RAGE". In the Add-On Explorer, navigate to the toolbox and click on Add and follow the instructions. For here <https://nl.mathworks.com/help/matlab/matlab_env/get-add-ons.html>__ more information.

Alternatively, you can download <https://github.com/Donders-Institute/MP2RAGE-related-scripts/releases>__ the MP2RAGE toolbox file yourzelf, and double click the MP2RAGE.mltbx file from within the Matlab File/Folder panel.