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Eng 898 create database query functions for base dg queries (#474)
Added many parameters to node query function (renamed to getConcepts since it covers both nodes and relations.) In particular, allow to * request nodes or relations or both * Filter on the concept being involved in a relation * Filter on that relation's type * Filter on that the type of other concepts in the relation * Filter on author of target concept or related concept * Filter on a subset of concepts or related concepts Added illustrative cucumber tests for the same, and did some TS cleanup of stepdefs.ts in the process.
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-171
lines changed

14 files changed

+858
-171
lines changed

apps/roam/src/components/settings/AdminPanel.tsx

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -7,15 +7,15 @@ import {
77
SupabaseContext,
88
} from "~/utils/supabaseContext";
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import {
10-
getNodes,
11-
getNodeSchemas,
10+
getConcepts,
11+
getSchemaConcepts,
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nodeSchemaSignature,
1313
type NodeSignature,
14-
type PConcept,
14+
type PConceptFull,
1515
} from "@repo/database/lib/queries";
1616
import { DGSupabaseClient } from "@repo/database/lib/client";
1717

18-
const NodeRow = ({ node }: { node: PConcept }) => {
18+
const NodeRow = ({ node }: { node: PConceptFull }) => {
1919
return (
2020
<tr>
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<td>{node.name}</td>
@@ -69,7 +69,7 @@ const NodeRow = ({ node }: { node: PConcept }) => {
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);
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};
7171

72-
const NodeTable = ({ nodes }: { nodes: PConcept[] }) => {
72+
const NodeTable = ({ nodes }: { nodes: PConceptFull[] }) => {
7373
return (
7474
<HTMLTable>
7575
<thead>
@@ -83,7 +83,7 @@ const NodeTable = ({ nodes }: { nodes: PConcept[] }) => {
8383
</tr>
8484
</thead>
8585
<tbody>
86-
{nodes.map((node: PConcept) => (
86+
{nodes.map((node: PConceptFull) => (
8787
<NodeRow node={node} key={node.id} />
8888
))}
8989
</tbody>
@@ -97,7 +97,7 @@ const AdminPanel = () => {
9797
const [schemas, setSchemas] = useState<NodeSignature[]>([]);
9898
const [showingSchema, setShowingSchema] =
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useState<NodeSignature>(nodeSchemaSignature);
100-
const [nodes, setNodes] = useState<PConcept[]>([]);
100+
const [nodes, setNodes] = useState<PConceptFull[]>([]);
101101
const [loading, setLoading] = useState(true);
102102
const [loadingNodes, setLoadingNodes] = useState(true);
103103
const [error, setError] = useState<string | null>(null);
@@ -130,10 +130,10 @@ const AdminPanel = () => {
130130
void (async () => {
131131
if (!ignore && supabase !== null && context !== null) {
132132
try {
133-
setSchemas(await getNodeSchemas(supabase, context.spaceId));
133+
setSchemas(await getSchemaConcepts(supabase, context.spaceId));
134134
} catch (e) {
135135
setError((e as Error).message);
136-
console.error("getNodeSchemas failed", e);
136+
console.error("getSchemaConcepts failed", e);
137137
} finally {
138138
setLoading(false);
139139
}
@@ -157,15 +157,15 @@ const AdminPanel = () => {
157157
try {
158158
setLoadingNodes(true);
159159
setNodes(
160-
await getNodes({
160+
await getConcepts({
161161
supabase,
162162
spaceId,
163163
schemaLocalIds: showingSchema.sourceLocalId,
164164
}),
165165
);
166166
} catch (e) {
167167
setError((e as Error).message);
168-
console.error("getNodes failed", e);
168+
console.error("getConcepts failed", e);
169169
} finally {
170170
setLoadingNodes(false);
171171
}

packages/database/README.md

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -71,10 +71,12 @@ If schema changes are deployed to `main` by another developer while you work on
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There are [cucumber](https://cucumber.io/) scenarios (in `packages/database/features`) to test the flow of database operations. We have not yet automated those tests, but you should run against the local environment when developing the database. You will need to:
7373

74+
1. set `SUPABASE_DB=local` in `packages/database/.env`
7475
1. Run `turbo dev` in one terminal (in the root directory)
75-
2. In another other terminal, `cd` to this directory (`packages/database`) and run the tests with `pnpm run test`
76+
1. In another other terminal, `cd` to this directory (`packages/database`) and run the tests with `pnpm run test`
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7778
Think of adding new tests if appropriate!
79+
Some more details in `doc/tests.md`
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## Using local code against your Supabase branch
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packages/database/doc/tests.md

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,33 @@
1+
# Designing cucumber tests
2+
3+
Cucumber is a harness for the gherkin language, allowing to make tests more legible. The steps are defined as regexp in `features/step-definitions/stepdefs.ts`. Currently, we assume the database is running with `turbo dev` in another terminal.
4+
5+
Some of test steps were defined to clear the database (`Given the database is blank`) or to put arbitrary data in the tables (`{word} are added to the database:`) which expects the name of a table as argument, and a markdown table for the table data.
6+
7+
The latter step requires some further explanations:
8+
9+
A lot of database objects use foreign keys, so we need to refer to numeric database identifiers. Those are defined by the database. To allow this to work, we have a pseudo-column called `$id`, which is a string alias that corresponds to the database numeric `id`. Make sure each value in that column is unique. We keep a dictionary of those aliases to the database numeric `id` in cucumber. When interpreting the table, if any other column is prefixed by a `_`, we will recursively search for strings and from the alias set and replace them with the appropriate database ids. Note that inserts are made in bulk, so you may need to break up your inserts according to dependencies. For example:
10+
11+
- Adding a schema first
12+
`And Concept are added to the database:`
13+
14+
| $id | name | @is_schema |
15+
| alias1 | Claim | true |
16+
17+
- Then a concept referring to the schema
18+
`And Concept are added to the database:`
19+
| $id | name | @is_schema | \_schema_id |
20+
| alias2 | claim 1 | false | alias1 |
21+
22+
Also, cucumber treats all columns as strings; if they contain a non-string literal (essentially number, boolean or JSON) you can use the `@` prefix in the column name so the cell value will be parsed as json before sending to the database. (`@` comes before `_` if both are used.)
23+
24+
Other steps that require explanation:
25+
26+
- `a user logged in space {word} and calling getConcepts with these parameters: {string}`
27+
- `Then query results should look like this`
28+
29+
This comes in pairs: The results from the query (whose parameters are defined as json) are checked against a table, using the same syntax as above. Only the columns defined are checked for equivalence.
30+
31+
- `the user {word} opens the {word} plugin in space {word}`.
32+
33+
This both creates the space and an account tied to that space. Because tying spaces and accounts goes through an edge function, it is the only good way to do both.

packages/database/features/addConcepts.feature

Lines changed: 81 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -14,7 +14,14 @@ Feature: Concept upsert
1414
Scenario Outline: Calling the upsert steps separately
1515
When user user1 upserts these documents to space s1:
1616
"""json
17-
[{ "source_local_id": "page1_uid", "created": "2000/01/01", "last_modified": "2001/01/02", "author_local_id":"user1"}]
17+
[
18+
{
19+
"source_local_id": "page1_uid",
20+
"created": "2000/01/01",
21+
"last_modified": "2001/01/02",
22+
"author_local_id": "user1"
23+
}
24+
]
1825
"""
1926
And user user1 upserts this content to space s1:
2027
"""json
@@ -36,11 +43,80 @@ Feature: Concept upsert
3643
"last_modified": "2001/01/02",
3744
"text": "Some text"
3845
},
39-
{ "author_local_id": "user2", "document_local_id":"page1_uid", "source_local_id": "s2", "scale":"document", "created": "2000/01/02", "last_modified": "2001/01/03", "part_of_local_id":"s1", "text": "Some subtext" },
4046
{
41-
"author_local_id": "user2", "document_inline": { "source_local_id": "page1_uid", "created": "2000/01/01", "last_modified": "2001/01/02", "author_local_id":"user2"}, "source_local_id": "s3", "scale": "document", "created": "2000/01/02", "last_modified": "2001/01/03", "part_of_local_id": "s2", "text": "Some subsubtext", "embedding_inline": {
42-
"model":"openai_text_embedding_3_small_1536", "vector":[1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
43-
} }
47+
"author_local_id": "user2",
48+
"document_local_id": "page1_uid",
49+
"source_local_id": "s2",
50+
"scale": "document",
51+
"created": "2000/01/02",
52+
"last_modified": "2001/01/03",
53+
"part_of_local_id": "s1",
54+
"text": "Some subtext"
55+
},
56+
{
57+
"author_local_id": "user2",
58+
"document_inline": {
59+
"source_local_id": "page1_uid",
60+
"created": "2000/01/01",
61+
"last_modified": "2001/01/02",
62+
"author_local_id": "user2"
63+
},
64+
"source_local_id": "s3",
65+
"scale": "document",
66+
"created": "2000/01/02",
67+
"last_modified": "2001/01/03",
68+
"part_of_local_id": "s2",
69+
"text": "Some subsubtext",
70+
"embedding_inline": {
71+
"model": "openai_text_embedding_3_small_1536",
72+
"vector": [
73+
1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
74+
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75+
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76+
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77+
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78+
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79+
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80+
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81+
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82+
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83+
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84+
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85+
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86+
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87+
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88+
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89+
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90+
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91+
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117+
]
118+
}
119+
}
44120
]
45121
"""
46122
And user user1 upserts these concepts to space s1:

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