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Quick start

Run commands from the repository root.

Display the CLI contract:

Rscript cancerppir.R --help

Run the synthetic example:

Rscript cancerppir.R examples/minimal_input.csv results string_cache 400 30 TRUE

The result is written to:

results/minimal_input/

The first STRING initialization can require substantial download time and disk space. Subsequent runs reuse the supplied cache directory.