RCroptest included #11
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| name: CI Build e Run DSSAT-CSM test | ||
| on: | ||
| push: | ||
| branches: | ||
| - develop | ||
| jobs: | ||
| build-and-run: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout | ||
| uses: actions/checkout@v2 | ||
| - name: Install dependencias | ||
| run: | | ||
| sudo apt-get update | ||
| sudo apt-get install -y git ca-certificates gfortran cmake | ||
| - name: Clone Repositories | ||
| run: | | ||
| git clone -b develop https://github.com/DSSAT/ci-dssat-csm-os.git | ||
| git clone -b develop https://github.com/DSSAT/dssat-csm-data.git | ||
| - name: DSSAT data directory | ||
| run: | | ||
| sudo mkdir -p /Applications/DSSAT48/ | ||
| sudo mkdir -p /Applications/DSSAT48/CTWork/workA | ||
| sudo mkdir -p /Applications/DSSAT48/CTWork/workB | ||
| sudo chmod -R 777 /Applications/DSSAT48/ | ||
| cp -r dssat-csm-data/* /Applications/DSSAT48/ | ||
| - name: Compile | ||
| run: | | ||
| mkdir -p ci-dssat-csm-os/build | ||
| cd ci-dssat-csm-os/build | ||
| cmake -DCMAKE_INSTALL_PREFIX=/Applications/DSSAT48/ .. | ||
| sudo make install | ||
| - name: Copy executable | ||
| run: | | ||
| cp ci-dssat-csm-os/build/bin/dscsm048 /Applications/DSSAT48/CTWork/workA/ | ||
| cp ci-dssat-csm-os/build/bin/dscsm048 /Applications/DSSAT48/CTWork/workB/ | ||
| - name: Run workA | ||
| run: | | ||
| export DSSAT_HOME="/Applications/DSSAT48/" | ||
| cd /Applications/DSSAT48/CTWork/workA | ||
| ./dscsm048 B ../../BatchFiles/All.L48 | ||
| - name: Run workB | ||
| run: | | ||
| export DSSAT_HOME="/Applications/DSSAT48/" | ||
| cd /Applications/DSSAT48/CTWork/workB | ||
| ./dscsm048 B ../../BatchFiles/All.L48 | ||
| # - name: CropTest | ||
| # run: | | ||
| # #PUT HERE THE CROPTEST LOGIC TO COMPARE FILES. | ||
| # cd /Applications/DSSAT48/CTWork/ | ||
| # diff workA/Summary.OUT workB/Summary.OUT | ||
| - name: Install R Package | ||
| jobs: | ||
| install-package: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| - name: Setup R | ||
| uses: r-lib/actions/setup-r@v2 | ||
| - name: Install package | ||
| run: | | ||
| repos <- c( "https://marcionicolau.github.io/RCroptestDeps", "https://cloud.r-project.org") | ||
| options(repos = c(CRAN = repos)) | ||
| install.packages('RCroptest' , dep=TRUE) | ||
| - name: List installed packages | ||
| run: | | ||
| Rscript -e 'installed.packages()' | ||
