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bwa-mem2 support #66

@vinjana

Description

@vinjana

bwa-mem2 is 1.7-2 times faster with ~2 times more memory. For time-critical data bwa-mem2 should be used.

bwa-mem2 command (CLI) seems to be compatible to bwa-mem. Therefore,

  • Change binary name and module load
  • Adapt conda environment
  • Is there anything necessary except for the path to the FASTA for working with bwa-mem2 reference genomes?

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