Fix dependencies for Python3 version 3.13

[mikegehard]

User description

I tried to follow the installation instructions but kept getting errors.

I updated the dependencies to get things working.

I updated duckdb to just 1.0.0 because I figured that it would be safer to do the minimal update possible to get things working.

I was able to get a successful solution after these upgrades using:

python -m alpha_codium.solve_problem
--dataset_name /Users/mikegehard/workspace/aiAssistedAgile/AlphaCodium/valid_and_test_processed \ --split_name test
--problem_number 0

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PR Type

enhancement, documentation

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Description

• Added a pre-requisites section to the README file, specifying the need for Python3 and a Rust compiler.
• Updated several dependencies in requirements.txt to ensure compatibility with Python 3.13:
  • fastapi updated to version 0.115.5.
  • tiktoken updated to version 0.8.0.
  • duckdb updated to version 1.0.0.

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Changes walkthrough 📝

	Relevant files
Documentation	README.md Add pre-requisites section to installation instructions    README.md Added pre-requisites section for installation. Listed Python3 and Rust compiler as necessary pre-requisites. +5/-0
Enhancement	requirements.txt Update dependencies for compatibility with Python 3.13      requirements.txt Updated fastapi version from 0.99.0 to 0.115.5. Updated tiktoken version from 0.5.2 to 0.8.0. Updated duckdb version from 0.9.2 to 1.0.0. +3/-3

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[qodo-merge-pro]

PR Reviewer Guide 🔍

Here are some key observations to aid the review process:

⏱️ Estimated effort to review: 1 🔵⚪⚪⚪⚪

🧪 No relevant tests

🔒 No security concerns identified

⚡ Recommended focus areas for review Version Compatibility The fastapi version upgrade from 0.99.0 to 0.115.5 is a significant jump that may introduce breaking changes. Need to verify that all fastapi endpoints still work as expected. Dependency Constraints The aiohttp version 3.9.3 may have compatibility issues with fastapi 0.115.5. Need to verify these versions work well together.

[qodo-merge-pro]

PR Code Suggestions ✨

Explore these optional code suggestions:

Category	Suggestion	Score
Possible issue	✅ Ensure compatibility between dependent packages by updating the ASGI server version to match the web framework requirements Suggestion Impact: The uvicorn version was updated from 0.22.0 to 0.24.0 to ensure compatibility with FastAPI 0.115.5. code diff: -uvicorn==0.22.0 +uvicorn==0.24.0 The uvicorn version 0.22.0 is not compatible with fastapi 0.115.5. Update uvicorn to at least version 0.24.0 to ensure compatibility with the newer FastAPI version. requirements.txt [2-7] fastapi==0.115.5 ... -uvicorn==0.22.0 +uvicorn==0.24.0 Suggestion importance[1-10]: 9 Why: This is a critical compatibility issue. FastAPI 0.115.5 requires a newer version of uvicorn, and using an incompatible version could cause runtime errors and stability issues.	9
	Pin dependency version to ensure compatibility with the target Python runtime version The aiohttp version 3.9.3 requires Python 3.8 or newer, and has known compatibility issues with Python 3.13. Consider pinning to version 3.8.6 which has better support for newer Python versions. requirements.txt [9] -aiohttp==3.9.3 +aiohttp==3.8.6 Apply this suggestion Suggestion importance[1-10]: 7 Why: The suggestion addresses a potential compatibility issue with Python versions, which could affect the project's stability across different environments. However, the impact is moderate since aiohttp 3.9.3 still works with most common Python versions.	7

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