Make sample reads mandatory

[islean]

Description

The Sample.reads column is currently an optional column, with two cancelled samples being the only one with an actual null value. This PR applies an alembic migration to set these two samples to have 0 reads and make the column not nullable

Added

Changed

Fixed

• Reads is non-nullable
• Samples with null reads are set to 0.

How to prepare for test

• Ssh to relevant server (depending on type of change)
• Use stage: us
• Paxa the environment: paxa
• Install on stage (example for Hasta):

  bash /home/proj/production/servers/resources/hasta.scilifelab.se/update-tool-stage.sh -e S_cg -t cg -b [THIS-BRANCH-NAME] -a

How to test

• Do ...

Expected test outcome

• Check that ...
• Take a screenshot and attach or copy/paste the output.

Review

• Tests executed by
• "Merge and deploy" approved by
  Thanks for filling in who performed the code review and the test!

This version is a

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

Implementation Plan

• Document in ...
• Deploy this branch on ...
• Inform to ...

[islean]

Tested the migration:

(cg_11) isakohlsson@isakoambp cg % alembic -c alembic/alembic.stage.ini upgrade 0ef55d6f0e0f
INFO  [alembic.runtime.migration] Context impl MySQLImpl.
INFO  [alembic.runtime.migration] Will assume non-transactional DDL.
INFO  [alembic.runtime.migration] Running upgrade 3874118753ff -> 0ef55d6f0e0f, Make sample reads non-nullable

Downgrade successful:

(cg_11) isakohlsson@isakoambp cg % alembic -c alembic/alembic.stage.ini downgrade 3874118753ff
INFO  [alembic.runtime.migration] Context impl MySQLImpl.
INFO  [alembic.runtime.migration] Will assume non-transactional DDL.
INFO  [alembic.runtime.migration] Running downgrade 0ef55d6f0e0f -> 3874118753ff, Make sample reads non-nullable
(cg_11) isakohlsson@isakoambp cg % 

[diitaz93]

👍

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud