Merge pull request #2 from CU-ESIIL/codex/simplify-and-organize-file-structure

Refactor repository structure for clarity

Author: ttuff

.DS_Store

@@ -33,8 +33,8 @@ jobs:
         id: docker_build_jupyterlab
         uses: docker/build-push-action@v5
         with:
-          context: docker/jupyterlab
-          file: docker/jupyterlab/Dockerfile
+          context: containers/jupyterlab
+          file: containers/jupyterlab/Dockerfile
           builder: ${{ steps.buildx.outputs.name }}
           push: true
           tags: |

.github/.DS_Store

@@ -46,3 +46,6 @@ po/*~
 
 # RStudio Connect folder
 rsconnect/
+
+# macOS
+.DS_Store

.github/workflows/build-and-push-jupyterlab-image.yml

@@ -21,9 +21,13 @@ Welcome to the **[Your Working Group Name]** repository, an integral part of the
 - [Link to more detailed bios or profiles if available.]
 
 ## Repository Structure
-- **Analysis Code**: Scripts for data analysis, statistical modeling, etc.
-- **Data Processing**: Scripts for cleaning, merging, and managing datasets.
-- **Visualization**: Code for creating figures, charts, and interactive visualizations.
+- **containers/**: Docker configurations for reproducible development environments.
+- **docs/**: Project documentation organized into:
+  - **orientation/**: Onboarding materials and training resources.
+  - **meeting-notes/**: Notes from group meetings.
+  - **code/**: Documentation for data processing, analysis, and visualization.
+  - **manuscript/**: Drafts and manuscript content.
+  - **references/**: Citations and reading notes.
 
 ## Meeting Notes and Agendas
 - Regular updates to keep all group members informed and engaged with the project's progress and direction.