diff --git a/.github/workflows/test_simpleaf.yml b/.github/workflows/test_simpleaf.yml
index 9632bfc..1a76298 100644
--- a/.github/workflows/test_simpleaf.yml
+++ b/.github/workflows/test_simpleaf.yml
@@ -14,7 +14,7 @@ jobs:
     if: "!contains(github.event.head_commit.message, 'skip ci')"
     strategy:
       matrix:
-        os: [ubuntu-latest, macos-13]
+        os: [ubuntu-latest, macos-15]
     runs-on: ${{ matrix.os }}
     steps:
       - name: Checkout repository
@@ -27,9 +27,6 @@ jobs:
           override: true
           components: rustfmt
       
-      - name: Check format
-        run: cargo fmt -- --check
-
       - name: Build
         run: cargo build --verbose --release
 
diff --git a/.gitignore b/.gitignore
index 270b9d5..9bc7a78 100644
--- a/.gitignore
+++ b/.gitignore
@@ -22,6 +22,10 @@ TEST_REF
 TEST_REF_CLAPV4
 TEST_REF_ROERS
 blarg
+gencode_v49_simpleaf/
+pbmc_1k_v3_test_quant/
+pbmc_1k_v3_test_quant_new/
+scripts/download_accessions_rush.sh
 
 # macOS Finder metadata
 **/.DS_Store
diff --git a/Cargo.lock b/Cargo.lock
index 60f74e9..6dc95fb 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -2,20 +2,11 @@
 # It is not intended for manual editing.
 version = 4
 
-[[package]]
-name = "addr2line"
-version = "0.24.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dfbe277e56a376000877090da837660b4427aad530e3028d44e0bffe4f89a1c1"
-dependencies = [
- "gimli",
-]
-
 [[package]]
 name = "adler2"
-version = "2.0.0"
+version = "2.0.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "512761e0bb2578dd7380c6baaa0f4ce03e84f95e960231d1dec8bf4d7d6e2627"
+checksum = "320119579fcad9c21884f5c4861d16174d0e06250625266f50fe6898340abefa"
 
 [[package]]
 name = "af-anndata"
@@ -35,22 +26,22 @@ dependencies = [
 
 [[package]]
 name = "ahash"
-version = "0.8.11"
+version = "0.8.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e89da841a80418a9b391ebaea17f5c112ffaaa96f621d2c285b5174da76b9011"
+checksum = "5a15f179cd60c4584b8a8c596927aadc462e27f2ca70c04e0071964a73ba7a75"
 dependencies = [
  "cfg-if",
- "getrandom 0.2.16",
+ "getrandom 0.3.4",
  "once_cell",
  "version_check",
- "zerocopy 0.7.35",
+ "zerocopy",
 ]
 
 [[package]]
 name = "aho-corasick"
-version = "1.1.3"
+version = "1.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916"
+checksum = "ddd31a130427c27518df266943a5308ed92d4b226cc639f5a8f1002816174301"
 dependencies = [
  "memchr",
 ]
@@ -61,12 +52,6 @@ version = "0.2.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "683d7910e743518b0e34f1186f92494becacb047c7b6bf616c96772180fef923"
 
-[[package]]
-name = "android-tzdata"
-version = "0.1.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e999941b234f3131b00bc13c22d06e8c5ff726d1b6318ac7eb276997bbb4fef0"
-
 [[package]]
 name = "android_system_properties"
 version = "0.1.5"
@@ -84,7 +69,7 @@ checksum = "ca98137d172a44bf6eb43c84aeaf4327bf35c65c36fc6550a5f9014103839d50"
 dependencies = [
  "anyhow",
  "flate2",
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "itertools 0.13.0",
  "log",
  "nalgebra-sparse",
@@ -116,19 +101,19 @@ dependencies = [
 
 [[package]]
 name = "annotate-snippets"
-version = "0.9.2"
+version = "0.10.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ccaf7e9dfbb6ab22c82e473cd1a8a7bd313c19a5b7e40970f3d89ef5a5c9e81e"
+checksum = "6d9b665789884a7e8fb06c84b295e923b03ca51edbb7d08f91a6a50322ecbfe6"
 dependencies = [
+ "anstyle",
  "unicode-width 0.1.14",
- "yansi-term",
 ]
 
 [[package]]
 name = "anstream"
-version = "0.6.18"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8acc5369981196006228e28809f761875c0327210a891e941f4c683b3a99529b"
+checksum = "824a212faf96e9acacdbd09febd34438f8f711fb84e09a8916013cd7815ca28d"
 dependencies = [
  "anstyle",
  "anstyle-parse",
@@ -141,44 +126,44 @@ dependencies = [
 
 [[package]]
 name = "anstyle"
-version = "1.0.10"
+version = "1.0.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "55cc3b69f167a1ef2e161439aa98aed94e6028e5f9a59be9a6ffb47aef1651f9"
+checksum = "940b3a0ca603d1eade50a4846a2afffd5ef57a9feac2c0e2ec2e14f9ead76000"
 
 [[package]]
 name = "anstyle-parse"
-version = "0.2.6"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9"
+checksum = "52ce7f38b242319f7cabaa6813055467063ecdc9d355bbb4ce0c68908cd8130e"
 dependencies = [
  "utf8parse",
 ]
 
 [[package]]
 name = "anstyle-query"
-version = "1.1.2"
+version = "1.1.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c"
+checksum = "40c48f72fd53cd289104fc64099abca73db4166ad86ea0b4341abe65af83dadc"
 dependencies = [
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "anstyle-wincon"
-version = "3.0.7"
+version = "3.0.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ca3534e77181a9cc07539ad51f2141fe32f6c3ffd4df76db8ad92346b003ae4e"
+checksum = "291e6a250ff86cd4a820112fb8898808a366d8f9f58ce16d1f538353ad55747d"
 dependencies = [
  "anstyle",
- "once_cell",
- "windows-sys 0.59.0",
+ "once_cell_polyfill",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "anyhow"
-version = "1.0.98"
+version = "1.0.102"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e16d2d3311acee920a9eb8d33b8cbc1787ce4a264e85f964c2404b969bdcd487"
+checksum = "7f202df86484c868dbad7eaa557ef785d5c66295e41b460ef922eca0723b842c"
 
 [[package]]
 name = "approx"
@@ -189,11 +174,20 @@ dependencies = [
  "num-traits",
 ]
 
+[[package]]
+name = "ar_archive_writer"
+version = "0.5.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7eb93bbb63b9c227414f6eb3a0adfddca591a8ce1e9b60661bb08969b87e340b"
+dependencies = [
+ "object",
+]
+
 [[package]]
 name = "argminmax"
-version = "0.6.2"
+version = "0.6.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "52424b59d69d69d5056d508b260553afd91c57e21849579cd1f50ee8b8b88eaa"
+checksum = "70f13d10a41ac8d2ec79ee34178d61e6f47a29c2edfe7ef1721c7383b0359e65"
 dependencies = [
  "num-traits",
 ]
@@ -241,18 +235,18 @@ checksum = "c7c24de15d275a1ecfd47a380fb4d5ec9bfe0933f309ed5e705b775596a3574d"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "async-trait"
-version = "0.1.88"
+version = "0.1.89"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e539d3fca749fcee5236ab05e93a52867dd549cc157c8cb7f99595f3cedffdb5"
+checksum = "9035ad2d096bed7955a320ee7e2230574d28fd3c3a0f186cbea1ff3c7eed5dbb"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -266,9 +260,12 @@ dependencies = [
 
 [[package]]
 name = "atoi_simd"
-version = "0.16.0"
+version = "0.16.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4790f9e8961209112beb783d85449b508673cf4a6a419c8449b210743ac4dbe9"
+checksum = "c2a49e05797ca52e312a0c658938b7d00693ef037799ef7187678f212d7684cf"
+dependencies = [
+ "debug_unsafe",
+]
 
 [[package]]
 name = "atomic-waker"
@@ -278,30 +275,9 @@ checksum = "1505bd5d3d116872e7271a6d4e16d81d0c8570876c8de68093a09ac269d8aac0"
 
 [[package]]
 name = "autocfg"
-version = "1.4.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26"
-
-[[package]]
-name = "backtrace"
-version = "0.3.74"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8d82cb332cdfaed17ae235a638438ac4d4839913cc2af585c3c6746e8f8bee1a"
-dependencies = [
- "addr2line",
- "cfg-if",
- "libc",
- "miniz_oxide",
- "object",
- "rustc-demangle",
- "windows-targets 0.52.6",
-]
-
-[[package]]
-name = "base64"
-version = "0.21.7"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9d297deb1925b89f2ccc13d7635fa0714f12c87adce1c75356b39ca9b7178567"
+checksum = "c08606f8c3cbf4ce6ec8e28fb0014a2c086708fe954eaa885384a6165172e7e8"
 
 [[package]]
 name = "base64"
@@ -323,21 +299,22 @@ checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
 
 [[package]]
 name = "bitflags"
-version = "2.9.0"
+version = "2.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5c8214115b7bf84099f1309324e63141d4c5d7cc26862f97a0a857dbefe165bd"
+checksum = "843867be96c8daad0d758b57df9392b6d8d271134fce549de6ce169ff98a92af"
 
 [[package]]
 name = "blake3"
-version = "1.8.2"
+version = "1.8.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3888aaa89e4b2a40fca9848e400f6a658a5a3978de7be858e209cafa8be9a4a0"
+checksum = "2468ef7d57b3fb7e16b576e8377cdbde2320c60e1491e961d11da40fc4f02a2d"
 dependencies = [
  "arrayref",
  "arrayvec",
  "cc",
  "cfg-if",
  "constant_time_eq",
+ "cpufeatures",
  "memmap2",
  "serde",
 ]
@@ -353,9 +330,9 @@ dependencies = [
 
 [[package]]
 name = "bstr"
-version = "1.12.0"
+version = "1.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "234113d19d0d7d613b40e86fb654acf958910802bcceab913a4f9e7cda03b1a4"
+checksum = "63044e1ae8e69f3b5a92c736ca6269b8d12fa7efe39bf34ddb06d102cf0e2cab"
 dependencies = [
  "memchr",
  "serde",
@@ -363,43 +340,43 @@ dependencies = [
 
 [[package]]
 name = "buffer-redux"
-version = "1.0.2"
+version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4e8acf87c5b9f5897cd3ebb9a327f420e0cae9dd4e5c1d2e36f2c84c571a58f1"
+checksum = "431a9cc8d7efa49bc326729264537f5e60affce816c66edf434350778c9f4f54"
 dependencies = [
  "memchr",
 ]
 
 [[package]]
 name = "bumpalo"
-version = "3.17.0"
+version = "3.20.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1628fb46dfa0b37568d12e5edd512553eccf6a22a78e8bde00bb4aed84d5bdbf"
+checksum = "5d20789868f4b01b2f2caec9f5c4e0213b41e3e5702a50157d699ae31ced2fcb"
 
 [[package]]
 name = "bytecount"
-version = "0.6.8"
+version = "0.6.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ce89b21cab1437276d2650d57e971f9d548a2d9037cc231abdc0562b97498ce"
+checksum = "175812e0be2bccb6abe50bb8d566126198344f707e304f45c648fd8f2cc0365e"
 
 [[package]]
 name = "bytemuck"
-version = "1.23.0"
+version = "1.25.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9134a6ef01ce4b366b50689c94f82c14bc72bc5d0386829828a2e2752ef7958c"
+checksum = "c8efb64bd706a16a1bdde310ae86b351e4d21550d98d056f22f8a7f7a2183fec"
 dependencies = [
  "bytemuck_derive",
 ]
 
 [[package]]
 name = "bytemuck_derive"
-version = "1.9.3"
+version = "1.10.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7ecc273b49b3205b83d648f0690daa588925572cc5063745bfe547fe7ec8e1a1"
+checksum = "f9abbd1bc6865053c427f7198e6af43bfdedc55ab791faed4fbd361d789575ff"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -410,9 +387,9 @@ checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b"
 
 [[package]]
 name = "bytes"
-version = "1.10.1"
+version = "1.11.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d71b6127be86fdcfddb610f7182ac57211d4b18a3e9c82eb2d17662f2227ad6a"
+checksum = "1e748733b7cbc798e1434b6ac524f0c1ff2ab456fe201501e6497c8417a4fc33"
 
 [[package]]
 name = "bzip2"
@@ -436,19 +413,20 @@ dependencies = [
 
 [[package]]
 name = "castaway"
-version = "0.2.3"
+version = "0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0abae9be0aaf9ea96a3b1b8b1b55c602ca751eba1b1500220cea4ecbafe7c0d5"
+checksum = "dec551ab6e7578819132c713a93c022a05d60159dc86e7a7050223577484c55a"
 dependencies = [
  "rustversion",
 ]
 
 [[package]]
 name = "cc"
-version = "1.2.20"
+version = "1.2.57"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "04da6a0d40b948dfc4fa8f5bbf402b0fc1a64a28dbf7d12ffd683550f2c1b63a"
+checksum = "7a0dd1ca384932ff3641c8718a02769f1698e7563dc6974ffd03346116310423"
 dependencies = [
+ "find-msvc-tools",
  "jobserver",
  "libc",
  "shlex",
@@ -456,17 +434,16 @@ dependencies = [
 
 [[package]]
 name = "cfg-if"
-version = "1.0.0"
+version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd"
+checksum = "9330f8b2ff13f34540b44e946ef35111825727b38d33286ef986142615121801"
 
 [[package]]
 name = "chrono"
-version = "0.4.41"
+version = "0.4.44"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c469d952047f47f91b68d1cba3f10d63c11d73e4636f24f08daf0278abf01c4d"
+checksum = "c673075a2e0e5f4a1dde27ce9dee1ea4558c7ffe648f576438a20ca1d2acc4b0"
 dependencies = [
- "android-tzdata",
  "iana-time-zone",
  "js-sys",
  "num-traits",
@@ -476,30 +453,19 @@ dependencies = [
 
 [[package]]
 name = "chrono-tz"
-version = "0.10.3"
+version = "0.10.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "efdce149c370f133a071ca8ef6ea340b7b88748ab0810097a9e2976eaa34b4f3"
+checksum = "a6139a8597ed92cf816dfb33f5dd6cf0bb93a6adc938f11039f371bc5bcd26c3"
 dependencies = [
  "chrono",
- "chrono-tz-build",
- "phf",
-]
-
-[[package]]
-name = "chrono-tz-build"
-version = "0.4.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8f10f8c9340e31fc120ff885fcdb54a0b48e474bbd77cab557f0c30a3e569402"
-dependencies = [
- "parse-zoneinfo",
- "phf_codegen",
+ "phf 0.12.1",
 ]
 
 [[package]]
 name = "clap"
-version = "4.5.37"
+version = "4.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eccb054f56cbd38340b380d4a8e69ef1f02f1af43db2f0cc817a4774d80ae071"
+checksum = "b193af5b67834b676abd72466a96c1024e6a6ad978a1f484bd90b85c94041351"
 dependencies = [
  "clap_builder",
  "clap_derive",
@@ -507,49 +473,49 @@ dependencies = [
 
 [[package]]
 name = "clap_builder"
-version = "4.5.37"
+version = "4.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "efd9466fac8543255d3b1fcad4762c5e116ffe808c8a3043d4263cd4fd4862a2"
+checksum = "714a53001bf66416adb0e2ef5ac857140e7dc3a0c48fb28b2f10762fc4b5069f"
 dependencies = [
  "anstream",
  "anstyle",
  "clap_lex",
- "strsim 0.11.1",
+ "strsim",
  "terminal_size",
 ]
 
 [[package]]
 name = "clap_derive"
-version = "4.5.32"
+version = "4.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "09176aae279615badda0765c0c0b3f6ed53f4709118af73cf4655d85d1530cd7"
+checksum = "1110bd8a634a1ab8cb04345d8d878267d57c3cf1b38d91b71af6686408bbca6a"
 dependencies = [
  "heck",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "clap_lex"
-version = "0.7.4"
+version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f46ad14479a25103f283c0f10005961cf086d8dc42205bb44c46ac563475dca6"
+checksum = "c8d4a3bb8b1e0c1050499d1815f5ab16d04f0959b233085fb31653fbfc9d98f9"
 
 [[package]]
 name = "cmake"
-version = "0.1.54"
+version = "0.1.57"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e7caa3f9de89ddbe2c607f4101924c5abec803763ae9534e4f4d7d8f84aa81f0"
+checksum = "75443c44cd6b379beb8c5b45d85d0773baf31cce901fe7bb252f4eff3008ef7d"
 dependencies = [
  "cc",
 ]
 
 [[package]]
 name = "cmd_lib"
-version = "1.9.5"
+version = "1.9.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "371c15a3c178d0117091bd84414545309ca979555b1aad573ef591ad58818d41"
+checksum = "1af0f9b65935ff457da75535a6b6ff117ac858f03f71191188b3b696f90aec5a"
 dependencies = [
  "cmd_lib_macros",
  "env_logger",
@@ -561,31 +527,31 @@ dependencies = [
 
 [[package]]
 name = "cmd_lib_macros"
-version = "1.9.5"
+version = "1.9.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cb844bd05be34d91eb67101329aeba9d3337094c04fd8507d821db7ebb488eaf"
+checksum = "1e69eee115667ccda8b9ed7010bcf13356ad45269fc92aa78534890b42809a64"
 dependencies = [
  "proc-macro-error2",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "colorchoice"
-version = "1.0.3"
+version = "1.0.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990"
+checksum = "1d07550c9036bf2ae0c684c4297d503f838287c83c53686d05370d0e139ae570"
 
 [[package]]
 name = "comfy-table"
-version = "7.1.4"
+version = "7.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4a65ebfec4fb190b6f90e944a817d60499ee0744e582530e2c9900a22e591d9a"
+checksum = "958c5d6ecf1f214b4c2bbbbf6ab9523a864bd136dcf71a7e8904799acfe1ad47"
 dependencies = [
  "crossterm",
  "unicode-segmentation",
- "unicode-width 0.2.0",
+ "unicode-width 0.2.2",
 ]
 
 [[package]]
@@ -605,9 +571,9 @@ dependencies = [
 
 [[package]]
 name = "constant_time_eq"
-version = "0.3.1"
+version = "0.4.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7c74b8349d32d297c9134b8c88677813a227df8f779daa29bfc29c183fe3dca6"
+checksum = "3d52eff69cd5e647efe296129160853a42795992097e8af39800e1060caeea9b"
 
 [[package]]
 name = "convert_case"
@@ -631,14 +597,14 @@ dependencies = [
 
 [[package]]
 name = "cookie_store"
-version = "0.21.1"
+version = "0.22.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2eac901828f88a5241ee0600950ab981148a18f2f756900ffba1b125ca6a3ef9"
+checksum = "15b2c103cf610ec6cae3da84a766285b42fd16aad564758459e6ecf128c75206"
 dependencies = [
  "cookie",
  "document-features",
  "idna",
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "log",
  "serde",
  "serde_derive",
@@ -664,9 +630,9 @@ dependencies = [
 
 [[package]]
 name = "crc32fast"
-version = "1.4.2"
+version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a97769d94ddab943e4510d138150169a2758b5ef3eb191a9ee688de3e23ef7b3"
+checksum = "9481c1c90cbf2ac953f07c8d4a58aa3945c425b7185c9154d67a65e4230da511"
 dependencies = [
  "cfg-if",
 ]
@@ -716,14 +682,15 @@ checksum = "d0a5c400df2834b80a4c3327b3aad3a4c4cd4de0629063962b03235697506a28"
 
 [[package]]
 name = "crossterm"
-version = "0.28.1"
+version = "0.29.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "829d955a0bb380ef178a640b91779e3987da38c9aea133b20614cfed8cdea9c6"
+checksum = "d8b9f2e4c67f833b660cdb0a3523065869fb35570177239812ed4c905aeff87b"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "crossterm_winapi",
+ "document-features",
  "parking_lot",
- "rustix 0.38.44",
+ "rustix",
  "winapi",
 ]
 
@@ -738,9 +705,9 @@ dependencies = [
 
 [[package]]
 name = "crypto-common"
-version = "0.1.6"
+version = "0.1.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1bfb12502f3fc46cca1bb51ac28df9d618d813cdc3d2f25b9fe775a34af26bb3"
+checksum = "78c8292055d1c1df0cce5d180393dc8cce0abec0a7102adb6c7b1eef6016d60a"
 dependencies = [
  "generic-array",
  "typenum",
@@ -748,44 +715,39 @@ dependencies = [
 
 [[package]]
 name = "csv"
-version = "1.3.1"
+version = "1.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "acdc4883a9c96732e4733212c01447ebd805833b7275a73ca3ee080fd77afdaf"
+checksum = "52cd9d68cf7efc6ddfaaee42e7288d3a99d613d4b50f76ce9827ae0c6e14f938"
 dependencies = [
  "csv-core",
  "itoa",
  "ryu",
- "serde",
+ "serde_core",
 ]
 
 [[package]]
 name = "csv-core"
-version = "0.1.12"
+version = "0.1.13"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7d02f3b0da4c6504f86e9cd789d8dbafab48c2321be74e9987593de5a894d93d"
+checksum = "704a3c26996a80471189265814dbc2c257598b96b8a7feae2d31ace646bb9782"
 dependencies = [
  "memchr",
 ]
 
 [[package]]
-name = "deranged"
-version = "0.4.0"
+name = "debug_unsafe"
+version = "0.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c9e6a11ca8224451684bc0d7d5a7adbf8f2fd6887261a1cfc3c0432f9d4068e"
-dependencies = [
- "powerfmt",
- "serde",
-]
+checksum = "7eed2c4702fa172d1ce21078faa7c5203e69f5394d48cc436d25928394a867a2"
 
 [[package]]
-name = "derivative"
-version = "2.2.0"
+name = "deranged"
+version = "0.5.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fcc3dd5e9e9c0b295d6e1e4d811fb6f157d5ffd784b8d202fc62eac8035a770b"
+checksum = "7cd812cc2bc1d69d4764bd80df88b4317eaef9e773c75226407d9bc0876b211c"
 dependencies = [
- "proc-macro2",
- "quote",
- "syn 1.0.109",
+ "powerfmt",
+ "serde_core",
 ]
 
 [[package]]
@@ -806,23 +768,23 @@ checksum = "97369cbbc041bc366949bc74d34658d6cda5621039731c6310521892a3a20ae0"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "document-features"
-version = "0.2.11"
+version = "0.2.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "95249b50c6c185bee49034bcb378a49dc2b5dff0be90ff6616d31d64febab05d"
+checksum = "d4b8a88685455ed29a21542a33abd9cb6510b6b129abadabdcef0f4c55bc8f61"
 dependencies = [
  "litrs",
 ]
 
 [[package]]
 name = "dyn-clone"
-version = "1.0.19"
+version = "1.0.20"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1c7a8fb8a9fbf66c1f703fe16184d10ca0ee9d23be5b4436400408ba54a95005"
+checksum = "d0881ea181b1df73ff77ffaaf9c7544ecc11e82fba9b5f27b262a3c73a332555"
 
 [[package]]
 name = "either"
@@ -839,15 +801,9 @@ dependencies = [
  "once_cell",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
-[[package]]
-name = "env_home"
-version = "0.1.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c7f84e12ccf0a7ddc17a6c41c93326024c42920d7ee630d04950e6926645c0fe"
-
 [[package]]
 name = "env_logger"
 version = "0.10.2"
@@ -869,19 +825,19 @@ checksum = "877a4ace8713b0bcf2a4e7eec82529c029f1d0619886d18145fea96c3ffe5c0f"
 
 [[package]]
 name = "errno"
-version = "0.3.11"
+version = "0.3.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "976dd42dc7e85965fe702eb8164f21f450704bdde31faefd6471dba214cb594e"
+checksum = "39cab71617ae0d63f51a36d69f866391735b51691dbda63cf6f96d042b63efeb"
 dependencies = [
  "libc",
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "ethnum"
-version = "1.5.1"
+version = "1.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0939f82868b77ef93ce3c3c3daf2b3c526b456741da5a1a4559e590965b6026b"
+checksum = "ca81e6b4777c89fd810c25a4be2b1bd93ea034fbe58e6a75216a34c6b82c539b"
 
 [[package]]
 name = "faccess"
@@ -918,14 +874,20 @@ version = "0.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2ab1300e0345c97d6d5ed20b90d53ea83e710e971215b47590ac5c6c69847b65"
 dependencies = [
- "thiserror 2.0.12",
+ "thiserror 2.0.18",
 ]
 
+[[package]]
+name = "find-msvc-tools"
+version = "0.1.9"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "5baebc0774151f905a1a2cc41989300b1e6fbb29aff0ceffa1064fdd3088d582"
+
 [[package]]
 name = "flate2"
-version = "1.1.1"
+version = "1.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7ced92e76e966ca2fd84c8f7aa01a4aea65b0eb6648d72f7c8f3e2764a67fece"
+checksum = "843fba2746e448b37e26a819579957415c8cef339bf08564fe8b7ddbd959573c"
 dependencies = [
  "crc32fast",
  "libz-ng-sys",
@@ -955,18 +917,18 @@ checksum = "d9c4f5dac5e15c24eb999c26181a6ca40b39fe946cbe4c263c7209467bc83af2"
 
 [[package]]
 name = "form_urlencoded"
-version = "1.2.1"
+version = "1.2.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e13624c2627564efccf4934284bdd98cbaa14e79b0b5a141218e507b3a823456"
+checksum = "cb4cb245038516f5f85277875cdaa4f7d2c9a0fa0468de06ed190163b1581fcf"
 dependencies = [
  "percent-encoding",
 ]
 
 [[package]]
 name = "futures"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "65bc07b1a8bc7c85c5f2e110c476c7389b4554ba72af57d8445ea63a576b0876"
+checksum = "8b147ee9d1f6d097cef9ce628cd2ee62288d963e16fb287bd9286455b241382d"
 dependencies = [
  "futures-channel",
  "futures-core",
@@ -979,9 +941,9 @@ dependencies = [
 
 [[package]]
 name = "futures-channel"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2dff15bf788c671c1934e366d07e30c1814a8ef514e1af724a602e8a2fbe1b10"
+checksum = "07bbe89c50d7a535e539b8c17bc0b49bdb77747034daa8087407d655f3f7cc1d"
 dependencies = [
  "futures-core",
  "futures-sink",
@@ -989,15 +951,15 @@ dependencies = [
 
 [[package]]
 name = "futures-core"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "05f29059c0c2090612e8d742178b0580d2dc940c837851ad723096f87af6663e"
+checksum = "7e3450815272ef58cec6d564423f6e755e25379b217b0bc688e295ba24df6b1d"
 
 [[package]]
 name = "futures-executor"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e28d1d997f585e54aebc3f97d39e72338912123a67330d723fdbb564d646c9f"
+checksum = "baf29c38818342a3b26b5b923639e7b1f4a61fc5e76102d4b1981c6dc7a7579d"
 dependencies = [
  "futures-core",
  "futures-task",
@@ -1006,38 +968,38 @@ dependencies = [
 
 [[package]]
 name = "futures-io"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9e5c1b78ca4aae1ac06c48a526a655760685149f0d465d21f37abfe57ce075c6"
+checksum = "cecba35d7ad927e23624b22ad55235f2239cfa44fd10428eecbeba6d6a717718"
 
 [[package]]
 name = "futures-macro"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "162ee34ebcb7c64a8abebc059ce0fee27c2262618d7b60ed8faf72fef13c3650"
+checksum = "e835b70203e41293343137df5c0664546da5745f82ec9b84d40be8336958447b"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "futures-sink"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e575fab7d1e0dcb8d0c7bcf9a63ee213816ab51902e6d244a95819acacf1d4f7"
+checksum = "c39754e157331b013978ec91992bde1ac089843443c49cbc7f46150b0fad0893"
 
 [[package]]
 name = "futures-task"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f90f7dce0722e95104fcb095585910c0977252f286e354b5e3bd38902cd99988"
+checksum = "037711b3d59c33004d3856fbdc83b99d4ff37a24768fa1be9ce3538a1cde4393"
 
 [[package]]
 name = "futures-util"
-version = "0.3.31"
+version = "0.3.32"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9fa08315bb612088cc391249efdc3bc77536f16c91f6cf495e6fbe85b20a4a81"
+checksum = "389ca41296e6190b48053de0321d02a77f32f8a5d2461dd38762c0593805c6d6"
 dependencies = [
  "futures-channel",
  "futures-core",
@@ -1047,7 +1009,6 @@ dependencies = [
  "futures-task",
  "memchr",
  "pin-project-lite",
- "pin-utils",
  "slab",
 ]
 
@@ -1063,40 +1024,47 @@ dependencies = [
 
 [[package]]
 name = "getrandom"
-version = "0.2.16"
+version = "0.2.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "335ff9f135e4384c8150d6f27c6daed433577f86b4750418338c01a1a2528592"
+checksum = "ff2abc00be7fca6ebc474524697ae276ad847ad0a6b3faa4bcb027e9a4614ad0"
 dependencies = [
  "cfg-if",
  "js-sys",
  "libc",
- "wasi 0.11.0+wasi-snapshot-preview1",
+ "wasi",
  "wasm-bindgen",
 ]
 
 [[package]]
 name = "getrandom"
-version = "0.3.2"
+version = "0.3.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "73fea8450eea4bac3940448fb7ae50d91f034f941199fcd9d909a5a07aa455f0"
+checksum = "899def5c37c4fd7b2664648c28120ecec138e4d395b459e5ca34f9cce2dd77fd"
 dependencies = [
  "cfg-if",
  "libc",
- "r-efi",
- "wasi 0.14.2+wasi-0.2.4",
+ "r-efi 5.3.0",
+ "wasip2",
 ]
 
 [[package]]
-name = "gimli"
-version = "0.31.1"
+name = "getrandom"
+version = "0.4.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "07e28edb80900c19c28f1072f2e8aeca7fa06b23cd4169cefe1af5aa3260783f"
+checksum = "0de51e6874e94e7bf76d726fc5d13ba782deca734ff60d5bb2fb2607c7406555"
+dependencies = [
+ "cfg-if",
+ "libc",
+ "r-efi 6.0.0",
+ "wasip2",
+ "wasip3",
+]
 
 [[package]]
 name = "glob"
-version = "0.3.2"
+version = "0.3.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a8d1add55171497b4705a648c6b583acafb01d58050a51727785f0b2c8e0a2b2"
+checksum = "0cc23270f6e1808e30a928bdc84dea0b9b4136a8bc82338574f23baf47bbd280"
 
 [[package]]
 name = "grangers"
@@ -1129,15 +1097,6 @@ version = "0.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888"
 
-[[package]]
-name = "hashbrown"
-version = "0.13.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "43a3c133739dddd0d2990f9a4bdf8eb4b21ef50e4851ca85ab661199821d510e"
-dependencies = [
- "ahash",
-]
-
 [[package]]
 name = "hashbrown"
 version = "0.14.5"
@@ -1152,9 +1111,9 @@ dependencies = [
 
 [[package]]
 name = "hashbrown"
-version = "0.15.2"
+version = "0.15.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bf151400ff0baff5465007dd2f3e717f3fe502074ca563069ce3a6629d07b289"
+checksum = "9229cfe53dfd69f0609a49f65461bd93001ea1ef889cd5529dd176593f5338a1"
 dependencies = [
  "allocator-api2",
  "equivalent",
@@ -1163,13 +1122,19 @@ dependencies = [
  "serde",
 ]
 
+[[package]]
+name = "hashbrown"
+version = "0.16.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "841d1cc9bed7f9236f321df977030373f4a4163ae1a7dbfe1a51a2c1a51d9100"
+
 [[package]]
 name = "hdf5-metno"
 version = "0.9.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "3167207f341f305141d3fbae48690442cb4b57771c827ccfae7b66b7cd8891bc"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "cfg-if",
  "hdf5-metno-derive",
  "hdf5-metno-sys",
@@ -1182,22 +1147,22 @@ dependencies = [
 
 [[package]]
 name = "hdf5-metno-derive"
-version = "0.9.2"
+version = "0.9.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "25557ccc26f5b17b8f6014c58761e5eb53e815728907071999c3957bfee23bc2"
+checksum = "205c825c5140aa2791cec795068e8aa8d299862009b7fbd59bd4d876b47842c5"
 dependencies = [
  "proc-macro-crate",
  "proc-macro-error2",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "hdf5-metno-src"
-version = "0.9.4"
+version = "0.9.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "956b57b8b4e133bcfbc874a2c9c6d4020e0da420dcfa05aea79091888f2b0763"
+checksum = "36b0303729f84fb0f2dc510d28b64cb716fb13e6a139a17e88db329123ecff82"
 dependencies = [
  "cmake",
  "libz-sys",
@@ -1241,9 +1206,9 @@ checksum = "2304e00983f87ffb38b55b444b5e3b60a884b5d30c0fca7d82fe33449bbe55ea"
 
 [[package]]
 name = "hermit-abi"
-version = "0.5.0"
+version = "0.5.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fbd780fe5cc30f81464441920d82ac8740e2e46b29a6fad543ddd075229ce37e"
+checksum = "fc0fef456e4baa96da950455cd02c081ca953b141298e41db3fc7e36b1da849c"
 
 [[package]]
 name = "hex"
@@ -1251,23 +1216,35 @@ version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7f24254aa9a54b5c858eaee2f5bccdb46aaf0e486a595ed5fd8f86ba55232a70"
 
+[[package]]
+name = "hi-doc"
+version = "0.1.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d2390a0c9be1370168ef9557833bad3bfa37e1720df61d7f7034f18c07b4e006"
+dependencies = [
+ "num-traits",
+ "rand",
+ "random_color",
+ "range-map",
+ "smallvec",
+]
+
 [[package]]
 name = "home"
-version = "0.5.11"
+version = "0.5.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "589533453244b0995c858700322199b2becb13b627df2851f64a2775d024abcf"
+checksum = "cc627f471c528ff0c4a49e1d5e60450c8f6461dd6d10ba9dcd3a61d3dff7728d"
 dependencies = [
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "http"
-version = "1.3.1"
+version = "1.4.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f4a85d31aea989eead29a3aaf9e1115a180df8282431156e533de47660892565"
+checksum = "e3ba2a386d7f85a81f119ad7498ebe444d2e22c2af0b86b069416ace48b3311a"
 dependencies = [
  "bytes",
- "fnv",
  "itoa",
 ]
 
@@ -1279,15 +1256,15 @@ checksum = "6dbf3de79e51f3d586ab4cb9d5c3e2c14aa28ed23d180cf89b4df0454a69cc87"
 
 [[package]]
 name = "humantime"
-version = "2.2.0"
+version = "2.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9b112acc8b3adf4b107a8ec20977da0273a8c386765a3ec0229bd500a1443f9f"
+checksum = "135b12329e5e3ce057a9f972339ea52bc954fe1e9358ef27f95e89716fbc5424"
 
 [[package]]
 name = "iana-time-zone"
-version = "0.1.63"
+version = "0.1.65"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b0c919e5debc312ad217002b8048a17b7d83f80703865bbfcfebb0458b0b27d8"
+checksum = "e31bc9ad994ba00e440a8aa5c9ef0ec67d5cb5e5cb0cc7f8b744a35b389cc470"
 dependencies = [
  "android_system_properties",
  "core-foundation-sys",
@@ -1295,7 +1272,7 @@ dependencies = [
  "js-sys",
  "log",
  "wasm-bindgen",
- "windows-core 0.61.0",
+ "windows-core",
 ]
 
 [[package]]
@@ -1309,21 +1286,22 @@ dependencies = [
 
 [[package]]
 name = "icu_collections"
-version = "1.5.0"
+version = "2.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db2fa452206ebee18c4b5c2274dbf1de17008e874b4dc4f0aea9d01ca79e4526"
+checksum = "4c6b649701667bbe825c3b7e6388cb521c23d88644678e83c0c4d0a621a34b43"
 dependencies = [
  "displaydoc",
+ "potential_utf",
  "yoke",
  "zerofrom",
  "zerovec",
 ]
 
 [[package]]
-name = "icu_locid"
-version = "1.5.0"
+name = "icu_locale_core"
+version = "2.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "13acbb8371917fc971be86fc8057c41a64b521c184808a698c02acc242dbf637"
+checksum = "edba7861004dd3714265b4db54a3c390e880ab658fec5f7db895fae2046b5bb6"
 dependencies = [
  "displaydoc",
  "litemap",
@@ -1332,104 +1310,72 @@ dependencies = [
  "zerovec",
 ]
 
-[[package]]
-name = "icu_locid_transform"
-version = "1.5.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "01d11ac35de8e40fdeda00d9e1e9d92525f3f9d887cdd7aa81d727596788b54e"
-dependencies = [
- "displaydoc",
- "icu_locid",
- "icu_locid_transform_data",
- "icu_provider",
- "tinystr",
- "zerovec",
-]
-
-[[package]]
-name = "icu_locid_transform_data"
-version = "1.5.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7515e6d781098bf9f7205ab3fc7e9709d34554ae0b21ddbcb5febfa4bc7df11d"
-
 [[package]]
 name = "icu_normalizer"
-version = "1.5.0"
+version = "2.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "19ce3e0da2ec68599d193c93d088142efd7f9c5d6fc9b803774855747dc6a84f"
+checksum = "5f6c8828b67bf8908d82127b2054ea1b4427ff0230ee9141c54251934ab1b599"
 dependencies = [
- "displaydoc",
  "icu_collections",
  "icu_normalizer_data",
  "icu_properties",
  "icu_provider",
  "smallvec",
- "utf16_iter",
- "utf8_iter",
- "write16",
  "zerovec",
 ]
 
 [[package]]
 name = "icu_normalizer_data"
-version = "1.5.1"
+version = "2.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c5e8338228bdc8ab83303f16b797e177953730f601a96c25d10cb3ab0daa0cb7"
+checksum = "7aedcccd01fc5fe81e6b489c15b247b8b0690feb23304303a9e560f37efc560a"
 
 [[package]]
 name = "icu_properties"
-version = "1.5.1"
+version = "2.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "93d6020766cfc6302c15dbbc9c8778c37e62c14427cb7f6e601d849e092aeef5"
+checksum = "020bfc02fe870ec3a66d93e677ccca0562506e5872c650f893269e08615d74ec"
 dependencies = [
- "displaydoc",
  "icu_collections",
- "icu_locid_transform",
+ "icu_locale_core",
  "icu_properties_data",
  "icu_provider",
- "tinystr",
+ "zerotrie",
  "zerovec",
 ]
 
 [[package]]
 name = "icu_properties_data"
-version = "1.5.1"
+version = "2.1.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "85fb8799753b75aee8d2a21d7c14d9f38921b54b3dbda10f5a3c7a7b82dba5e2"
+checksum = "616c294cf8d725c6afcd8f55abc17c56464ef6211f9ed59cccffe534129c77af"
 
 [[package]]
 name = "icu_provider"
-version = "1.5.0"
+version = "2.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6ed421c8a8ef78d3e2dbc98a973be2f3770cb42b606e3ab18d6237c4dfde68d9"
+checksum = "85962cf0ce02e1e0a629cc34e7ca3e373ce20dda4c4d7294bbd0bf1fdb59e614"
 dependencies = [
  "displaydoc",
- "icu_locid",
- "icu_provider_macros",
- "stable_deref_trait",
- "tinystr",
+ "icu_locale_core",
  "writeable",
  "yoke",
  "zerofrom",
+ "zerotrie",
  "zerovec",
 ]
 
 [[package]]
-name = "icu_provider_macros"
-version = "1.5.0"
+name = "id-arena"
+version = "2.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1ec89e9337638ecdc08744df490b221a7399bf8d164eb52a665454e60e075ad6"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.101",
-]
+checksum = "3d3067d79b975e8844ca9eb072e16b31c3c1c36928edf9c6789548c524d0d954"
 
 [[package]]
 name = "idna"
-version = "1.0.3"
+version = "1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "686f825264d630750a544639377bae737628043f20d38bbc029e8f29ea968a7e"
+checksum = "3b0875f23caa03898994f6ddc501886a45c7d3d62d04d2d90788d47be1b1e4de"
 dependencies = [
  "idna_adapter",
  "smallvec",
@@ -1438,9 +1384,9 @@ dependencies = [
 
 [[package]]
 name = "idna_adapter"
-version = "1.2.0"
+version = "1.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "daca1df1c957320b2cf139ac61e7bd64fed304c5040df000a745aa1de3b4ef71"
+checksum = "3acae9609540aa318d1bc588455225fb2085b9ed0c4f6bd0d9d5bcd86f1a0344"
 dependencies = [
  "icu_normalizer",
  "icu_properties",
@@ -1458,32 +1404,33 @@ dependencies = [
 
 [[package]]
 name = "indexmap"
-version = "2.9.0"
+version = "2.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cea70ddb795996207ad57735b50c5982d8844f38ba9ee5f1aedcfb708a2aa11e"
+checksum = "7714e70437a7dc3ac8eb7e6f8df75fd8eb422675fc7678aff7364301092b1017"
 dependencies = [
  "equivalent",
- "hashbrown 0.15.2",
+ "hashbrown 0.16.1",
  "rayon",
  "serde",
+ "serde_core",
 ]
 
 [[package]]
 name = "is-terminal"
-version = "0.4.16"
+version = "0.4.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e04d7f318608d35d4b61ddd75cbdaee86b023ebe2bd5a66ee0915f0bf93095a9"
+checksum = "3640c1c38b8e4e43584d8df18be5fc6b0aa314ce6ebf51b53313d4306cca8e46"
 dependencies = [
  "hermit-abi",
  "libc",
- "windows-sys 0.59.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "is_terminal_polyfill"
-version = "1.70.1"
+version = "1.70.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf"
+checksum = "a6cb138bb79a146c1bd460005623e142ef0181e3d0219cb493e02f7d08a35695"
 
 [[package]]
 name = "itertools"
@@ -1505,9 +1452,9 @@ dependencies = [
 
 [[package]]
 name = "itoa"
-version = "1.0.15"
+version = "1.0.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4a5f13b858c8d314ee3e8f639011f7ccefe71f97f96e50151fb991f267928e2c"
+checksum = "92ecc6618181def0457392ccd0ee51198e065e016d1d527a7ac1b6dc7c1f09d2"
 
 [[package]]
 name = "itoap"
@@ -1517,19 +1464,19 @@ checksum = "9028f49264629065d057f340a86acb84867925865f73bbf8d47b4d149a7e88b8"
 
 [[package]]
 name = "jobserver"
-version = "0.1.33"
+version = "0.1.34"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "38f262f097c174adebe41eb73d66ae9c06b2844fb0da69969647bbddd9b0538a"
+checksum = "9afb3de4395d6b3e67a780b6de64b51c978ecf11cb9a462c66be7d4ca9039d33"
 dependencies = [
- "getrandom 0.3.2",
+ "getrandom 0.3.4",
  "libc",
 ]
 
 [[package]]
 name = "jrsonnet-cli"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "adcdbb712f233b3ef7bd533643aa494431cc28023b051433bb35a87cded6e7df"
+checksum = "5d873c0c2cec518cda86b73bb559f6e54a91d012fa2e7f85da36f53e9326c57b"
 dependencies = [
  "clap",
  "jrsonnet-evaluator",
@@ -1540,13 +1487,13 @@ dependencies = [
 
 [[package]]
 name = "jrsonnet-evaluator"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0951f206ee982ef3c61ed49c2779b3649858d2b7c6748943e4c7f36f6df55f9c"
+checksum = "0df4f11cf6f83ab15c579a84476fb174afc56ad2e6020c47ef96f74a64097208"
 dependencies = [
  "annotate-snippets",
- "derivative",
- "hashbrown 0.13.2",
+ "hashbrown 0.14.5",
+ "hi-doc",
  "jrsonnet-gcmodule",
  "jrsonnet-interner",
  "jrsonnet-macros",
@@ -1555,75 +1502,74 @@ dependencies = [
  "pathdiff",
  "rustc-hash",
  "serde",
+ "stacker",
  "static_assertions",
- "strsim 0.10.0",
+ "strsim",
  "thiserror 1.0.69",
 ]
 
 [[package]]
 name = "jrsonnet-gcmodule"
-version = "0.3.9"
+version = "0.3.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d467f7517c02fa001e474e3aa61268d059dd5a982ff81bff2f28ed3b7872ec37"
+checksum = "87122f4aa9b77c38f96e43d9ba4b7717d63aa87b137090a16ec0107cf17abdac"
 dependencies = [
  "jrsonnet-gcmodule-derive",
- "parking_lot",
 ]
 
 [[package]]
 name = "jrsonnet-gcmodule-derive"
-version = "0.3.9"
+version = "0.3.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b3a22c4a0e37dca11bb4d0aa23695477216859505dc4e5f3f6089587a12e597"
+checksum = "17eefaaba135591284e11cda15ed067247bec5fe9ece4fabc2c0df650d7b955a"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "jrsonnet-interner"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9d2332eb6c0bbd27e81ed8ad488a70e448437dd17b54e90cf3b8974b82c3c379"
+checksum = "829e3aac0a8b54b2beec0cd8a79ff1622f3eb5679eea20ce89506c45d81bf294"
 dependencies = [
- "hashbrown 0.13.2",
+ "hashbrown 0.14.5",
  "jrsonnet-gcmodule",
  "rustc-hash",
- "structdump",
 ]
 
 [[package]]
 name = "jrsonnet-macros"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e4b4d289fa4d4992f0a791de2e9fbdae7100005d28fced76fc49a2d70b5737f5"
+checksum = "9a49d8f1c60974179b9ad07df5a78a12ebc14e7e6e0056d64c5b7d2d0c01005a"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 1.0.109",
+ "syn 2.0.117",
+ "syn-dissect-closure",
 ]
 
 [[package]]
 name = "jrsonnet-parser"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8d403645f250bdc8f31a2a142ebd4608f9595bdad1a89db871ccdfe81c427957"
+checksum = "2b2ec499e9a4774ec3764469e6c26f65fddeb170aa27299a652ec4a5252eb618"
 dependencies = [
  "jrsonnet-gcmodule",
  "jrsonnet-interner",
  "peg",
  "static_assertions",
- "structdump",
 ]
 
 [[package]]
 name = "jrsonnet-stdlib"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "99d7f31ed348ea5f7dfb379ddc65fe1773d82cab7698a8dbc4d2d72013795eba"
+checksum = "4e3616e3d1455faebdaa62a033df7889b1dce5304bf054e4478f8285300a0f7c"
 dependencies = [
- "base64 0.21.7",
+ "base64",
  "jrsonnet-evaluator",
  "jrsonnet-gcmodule",
  "jrsonnet-macros",
@@ -1635,14 +1581,13 @@ dependencies = [
  "sha1",
  "sha2",
  "sha3",
- "structdump",
 ]
 
 [[package]]
 name = "jrsonnet-types"
-version = "0.5.0-pre95"
+version = "0.5.0-pre97"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "68522259250172a8aa3714e2f99466641cc450b5c758fbdaa05265f86c1e0d97"
+checksum = "7fb27d59a775189956a35e4d46e959ad93a3e2cf6771ad6b9bc64615af439d87"
 dependencies = [
  "jrsonnet-gcmodule",
  "peg",
@@ -1650,9 +1595,9 @@ dependencies = [
 
 [[package]]
 name = "js-sys"
-version = "0.3.77"
+version = "0.3.91"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1cfaf33c695fc6e08064efbc1f72ec937429614f25eef83af942d0e227c3a28f"
+checksum = "b49715b7073f385ba4bc528e5747d02e66cb39c6146efb66b781f131f0fb399c"
 dependencies = [
  "once_cell",
  "wasm-bindgen",
@@ -1660,9 +1605,9 @@ dependencies = [
 
 [[package]]
 name = "keccak"
-version = "0.1.5"
+version = "0.1.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ecc2af9a1119c51f12a14607e783cb977bde58bc069ff0c3da1095e635d70654"
+checksum = "cb26cec98cce3a3d96cbb7bced3c4b16e3d13f27ec56dbd62cbc8f39cfb9d653"
 dependencies = [
  "cpufeatures",
 ]
@@ -1685,7 +1630,7 @@ dependencies = [
  "convert_case",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -1694,27 +1639,33 @@ version = "1.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe"
 
+[[package]]
+name = "leb128fmt"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "09edd9e8b54e49e587e4f6295a7d29c3ea94d469cb40ab8ca70b288248a81db2"
+
 [[package]]
 name = "libc"
-version = "0.2.172"
+version = "0.2.183"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d750af042f7ef4f724306de029d18836c26c1765a54a6a3f094cbd23a7267ffa"
+checksum = "b5b646652bf6661599e1da8901b3b9522896f01e736bad5f723fe7a3a27f899d"
 
 [[package]]
 name = "libloading"
-version = "0.8.6"
+version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fc2f4eb4bc735547cfed7c0a4922cbd04a4655978c09b54f1f7b228750664c34"
+checksum = "d7c4b02199fee7c5d21a5ae7d8cfa79a6ef5bb2fc834d6e9058e89c825efdc55"
 dependencies = [
  "cfg-if",
- "windows-targets 0.52.6",
+ "windows-link",
 ]
 
 [[package]]
 name = "libm"
-version = "0.2.13"
+version = "0.2.16"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c9627da5196e5d8ed0b0495e61e518847578da83483c37288316d9b2e03a7f72"
+checksum = "b6d2cec3eae94f9f509c767b45932f1ada8350c4bdb85af2fcab4a3c14807981"
 
 [[package]]
 name = "libsw"
@@ -1733,9 +1684,9 @@ checksum = "262dad4b91186067a332cac496dd358ace6e9a4acdb050c68ca2920513e9d462"
 
 [[package]]
 name = "libz-ng-sys"
-version = "1.1.22"
+version = "1.1.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a7118c2c2a3c7b6edc279a8b19507672b9c4d716f95e671172dfa4e23f9fd824"
+checksum = "89b6bd0c289b22f4973012fa91dfed9d5f4b633567bb26f9454fbf437817b499"
 dependencies = [
  "cmake",
  "libc",
@@ -1743,9 +1694,9 @@ dependencies = [
 
 [[package]]
 name = "libz-sys"
-version = "1.1.22"
+version = "1.1.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b70e7a7df205e92a1a4cd9aaae7898dac0aa555503cc0a649494d0d60e7651d"
+checksum = "d52f4c29e2a68ac30c9087e1b772dc9f44a2b66ed44edf2266cf2be9b03dafc1"
 dependencies = [
  "cc",
  "libc",
@@ -1761,43 +1712,36 @@ checksum = "0717cef1bc8b636c6e1c1bbdefc09e6322da8a9321966e8928ef80d20f7f770f"
 
 [[package]]
 name = "linux-raw-sys"
-version = "0.4.15"
+version = "0.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d26c52dbd32dccf2d10cac7725f8eae5296885fb5703b261f7d0a0739ec807ab"
-
-[[package]]
-name = "linux-raw-sys"
-version = "0.9.4"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cd945864f07fe9f5371a27ad7b52a172b4b499999f1d97574c9fa68373937e12"
+checksum = "32a66949e030da00e8c7d4434b251670a91556f4144941d37452769c25d58a53"
 
 [[package]]
 name = "litemap"
-version = "0.7.5"
+version = "0.8.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "23fb14cb19457329c82206317a5663005a4d404783dc74f4252769b0d5f42856"
+checksum = "6373607a59f0be73a39b6fe456b8192fcc3585f602af20751600e974dd455e77"
 
 [[package]]
 name = "litrs"
-version = "0.4.1"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b4ce301924b7887e9d637144fdade93f9dfff9b60981d4ac161db09720d39aa5"
+checksum = "11d3d7f243d5c5a8b9bb5d6dd2b1602c0cb0b9db1621bafc7ed66e35ff9fe092"
 
 [[package]]
 name = "lock_api"
-version = "0.4.12"
+version = "0.4.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17"
+checksum = "224399e74b87b5f3557511d98dff8b14089b3dadafcab6bb93eab67d3aace965"
 dependencies = [
- "autocfg",
  "scopeguard",
 ]
 
 [[package]]
 name = "log"
-version = "0.4.27"
+version = "0.4.29"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "13dc2df351e3202783a1fe0d44375f7295ffb4049267b0f3018346dc122a1d94"
+checksum = "5e5032e24019045c762d3c0f28f5b6b8bbf38563a65908389bf7978758920897"
 
 [[package]]
 name = "lz4"
@@ -1831,18 +1775,18 @@ dependencies = [
 
 [[package]]
 name = "matchers"
-version = "0.1.0"
+version = "0.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8263075bb86c5a1b1427b5ae862e8889656f126e9f77c484496e8b47cf5c5558"
+checksum = "d1525a2a28c7f4fa0fc98bb91ae755d1e2d1505079e05539e35bc876b5d65ae9"
 dependencies = [
- "regex-automata 0.1.10",
+ "regex-automata",
 ]
 
 [[package]]
 name = "matrixmultiply"
-version = "0.3.9"
+version = "0.3.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a"
+checksum = "a06de3016e9fae57a36fd14dba131fccf49f74b40b7fbdb472f96e361ec71a08"
 dependencies = [
  "autocfg",
  "rawpointer",
@@ -1856,15 +1800,15 @@ checksum = "490cc448043f947bae3cbee9c203358d62dbee0db12107a74be5c30ccfd09771"
 
 [[package]]
 name = "memchr"
-version = "2.7.4"
+version = "2.8.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "78ca9ab1a0babb1e7d5695e3530886289c18cf2f87ec19a575a0abdce112e3a3"
+checksum = "f8ca58f447f06ed17d5fc4043ce1b10dd205e060fb3ce5b979b8ed8e59ff3f79"
 
 [[package]]
 name = "memmap2"
-version = "0.9.5"
+version = "0.9.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fd3f7eed9d3848f8b98834af67102b720745c4ec028fcd0aa0239277e7de374f"
+checksum = "714098028fe011992e1c3962653c96b2d578c4b4bce9036e15ff220319b1e0e3"
 dependencies = [
  "libc",
 ]
@@ -1880,22 +1824,23 @@ dependencies = [
 
 [[package]]
 name = "miniz_oxide"
-version = "0.8.8"
+version = "0.8.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3be647b768db090acb35d5ec5db2b0e1f1de11133ca123b9eacf5137868f892a"
+checksum = "1fa76a2c86f704bdb222d66965fb3d63269ce38518b83cb0575fca855ebb6316"
 dependencies = [
  "adler2",
+ "simd-adler32",
 ]
 
 [[package]]
 name = "mio"
-version = "1.0.3"
+version = "1.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2886843bf800fba2e3377cff24abf6379b4c4d5c6681eaf9ea5b0d15090450bd"
+checksum = "a69bcab0ad47271a0234d9422b131806bf3968021e5dc9328caf2d4cd58557fc"
 dependencies = [
  "libc",
- "wasi 0.11.0+wasi-snapshot-preview1",
- "windows-sys 0.52.0",
+ "wasi",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -1944,7 +1889,7 @@ checksum = "254a5372af8fc138e36684761d3c0cdb758a4410e938babcff1c860ce14ddbfc"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -1996,7 +1941,7 @@ checksum = "62d3115cc93dac9fabdfd25f7d4fda51ad4a959fb4667d39af20f70bddfb3574"
 dependencies = [
  "cfg-if",
  "flate2",
- "thiserror 2.0.12",
+ "thiserror 2.0.18",
 ]
 
 [[package]]
@@ -2054,7 +1999,7 @@ dependencies = [
  "bit-vec",
  "bstr",
  "byteorder",
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "noodles-bgzf",
  "noodles-core",
 ]
@@ -2078,7 +2023,7 @@ version = "0.43.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "2d968405cf400568b24a47587b6e916d0cf118d7d38625c29472f491461f094e"
 dependencies = [
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "noodles-bgzf",
  "noodles-core",
  "noodles-csi",
@@ -2107,21 +2052,20 @@ dependencies = [
 
 [[package]]
 name = "ntapi"
-version = "0.4.1"
+version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e8a3895c6391c39d7fe7ebc444a87eb2991b2a0bc718fdabd071eec617fc68e4"
+checksum = "c3b335231dfd352ffb0f8017f3b6027a4917f7df785ea2143d8af2adc66980ae"
 dependencies = [
  "winapi",
 ]
 
 [[package]]
 name = "nu-ansi-term"
-version = "0.46.0"
+version = "0.50.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "77a8165726e8236064dbb45459242600304b42a5ea24ee2948e18e023bf7ba84"
+checksum = "7957b9740744892f114936ab4a57b3f487491bbeafaf8083688b16841a4240e5"
 dependencies = [
- "overload",
- "winapi",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -2159,9 +2103,9 @@ dependencies = [
 
 [[package]]
 name = "num-conv"
-version = "0.1.0"
+version = "0.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "51d515d32fb182ee37cda2ccdcb92950d6a3c2893aa280e540671c2cd0f3b1d9"
+checksum = "cf97ec579c3c42f953ef76dbf8d55ac91fb219dde70e49aa4a6b7d74e9919050"
 
 [[package]]
 name = "num-integer"
@@ -2224,57 +2168,57 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustc_version",
- "syn 2.0.101",
+ "syn 2.0.117",
  "urlencoding",
 ]
 
 [[package]]
 name = "object"
-version = "0.36.7"
+version = "0.37.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "62948e14d923ea95ea2c7c86c71013138b66525b86bdc08d2dcc262bdb497b87"
+checksum = "ff76201f031d8863c38aa7f905eca4f53abbfa15f609db4277d44cd8938f33fe"
 dependencies = [
  "memchr",
 ]
 
 [[package]]
 name = "once_cell"
-version = "1.21.3"
+version = "1.21.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9f7c3e4beb33f85d45ae3e3a1792185706c8e16d043238c593331cc7cd313b50"
+
+[[package]]
+name = "once_cell_polyfill"
+version = "1.70.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "42f5e15c9953c5e4ccceeb2e7382a716482c34515315f7b03532b8b4e8393d2d"
+checksum = "384b8ab6d37215f3c5301a95a4accb5d64aa607f1fcb26a11b5303878451b4fe"
 
 [[package]]
 name = "os_pipe"
-version = "1.2.1"
+version = "1.2.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5ffd2b0a5634335b135d5728d84c5e0fd726954b87111f7506a61c502280d982"
+checksum = "7d8fae84b431384b68627d0f9b3b1245fcf9f46f6c0e3dc902e9dce64edd1967"
 dependencies = [
  "libc",
- "windows-sys 0.59.0",
+ "windows-sys 0.48.0",
 ]
 
-[[package]]
-name = "overload"
-version = "0.1.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b15813163c1d831bf4a13c3610c05c0d03b39feb07f7e09fa234dac9b15aaf39"
-
 [[package]]
 name = "papergrid"
-version = "0.15.0"
+version = "0.17.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "30268a8d20c2c0d126b2b6610ab405f16517f6ba9f244d8c59ac2c512a8a1ce7"
+checksum = "6978128c8b51d8f4080631ceb2302ab51e32cc6e8615f735ee2f83fd269ae3f1"
 dependencies = [
- "ahash",
  "bytecount",
- "unicode-width 0.2.0",
+ "fnv",
+ "unicode-width 0.2.2",
 ]
 
 [[package]]
 name = "parking_lot"
-version = "0.12.3"
+version = "0.12.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f1bf18183cf54e8d6059647fc3063646a1801cf30896933ec2311622cc4b9a27"
+checksum = "93857453250e3077bd71ff98b6a65ea6621a19bb0f559a85248955ac12c45a1a"
 dependencies = [
  "lock_api",
  "parking_lot_core",
@@ -2282,24 +2226,15 @@ dependencies = [
 
 [[package]]
 name = "parking_lot_core"
-version = "0.9.10"
+version = "0.9.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e401f977ab385c9e4e3ab30627d6f26d00e2c73eef317493c4ec6d468726cf8"
+checksum = "2621685985a2ebf1c516881c026032ac7deafcda1a2c9b7850dc81e3dfcb64c1"
 dependencies = [
  "cfg-if",
  "libc",
  "redox_syscall",
  "smallvec",
- "windows-targets 0.52.6",
-]
-
-[[package]]
-name = "parse-zoneinfo"
-version = "0.3.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1f2a05b18d44e2957b88f96ba460715e295bc1d7510468a2f3d3b44535d26c24"
-dependencies = [
- "regex",
+ "windows-link",
 ]
 
 [[package]]
@@ -2349,9 +2284,9 @@ checksum = "132dca9b868d927b35b5dd728167b2dee150eb1ad686008fc71ccb298b776fca"
 
 [[package]]
 name = "percent-encoding"
-version = "2.3.1"
+version = "2.3.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e3148f5046208a5d56bcfc03053e3ca6334e51da8dfb19b6cdc8b306fae3283e"
+checksum = "9b4f627cb1b25917193a259e49bdad08f671f8d9708acfd5fe0a8c1455d87220"
 
 [[package]]
 name = "permutation"
@@ -2361,20 +2296,19 @@ checksum = "df202b0b0f5b8e389955afd5f27b007b00fb948162953f1db9c70d2c7e3157d7"
 
 [[package]]
 name = "pest"
-version = "2.8.0"
+version = "2.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "198db74531d58c70a361c42201efde7e2591e976d518caf7662a47dc5720e7b6"
+checksum = "e0848c601009d37dfa3430c4666e147e49cdcf1b92ecd3e63657d8a5f19da662"
 dependencies = [
  "memchr",
- "thiserror 2.0.12",
  "ucd-trie",
 ]
 
 [[package]]
 name = "pest_derive"
-version = "2.8.0"
+version = "2.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d725d9cfd79e87dccc9341a2ef39d1b6f6353d68c4b33c177febbe1a402c97c5"
+checksum = "11f486f1ea21e6c10ed15d5a7c77165d0ee443402f0780849d1768e7d9d6fe77"
 dependencies = [
  "pest",
  "pest_generator",
@@ -2382,85 +2316,93 @@ dependencies = [
 
 [[package]]
 name = "pest_generator"
-version = "2.8.0"
+version = "2.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "db7d01726be8ab66ab32f9df467ae8b1148906685bbe75c82d1e65d7f5b3f841"
+checksum = "8040c4647b13b210a963c1ed407c1ff4fdfa01c31d6d2a098218702e6664f94f"
 dependencies = [
  "pest",
  "pest_meta",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "pest_meta"
-version = "2.8.0"
+version = "2.8.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7f9f832470494906d1fca5329f8ab5791cc60beb230c74815dff541cbd2b5ca0"
+checksum = "89815c69d36021a140146f26659a81d6c2afa33d216d736dd4be5381a7362220"
 dependencies = [
- "once_cell",
  "pest",
  "sha2",
 ]
 
 [[package]]
 name = "phf"
-version = "0.11.3"
+version = "0.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1fd6780a80ae0c52cc120a26a1a42c1ae51b247a253e4e06113d23d2c2edd078"
+checksum = "913273894cec178f401a31ec4b656318d95473527be05c0752cc41cdc32be8b7"
 dependencies = [
- "phf_macros",
- "phf_shared",
+ "phf_shared 0.12.1",
 ]
 
 [[package]]
-name = "phf_codegen"
-version = "0.11.3"
+name = "phf"
+version = "0.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "aef8048c789fa5e851558d709946d6d79a8ff88c0440c587967f8e94bfb1216a"
+checksum = "c1562dc717473dbaa4c1f85a36410e03c047b2e7df7f45ee938fbef64ae7fadf"
 dependencies = [
- "phf_generator",
- "phf_shared",
+ "phf_macros",
+ "phf_shared 0.13.1",
+ "serde",
 ]
 
 [[package]]
 name = "phf_generator"
-version = "0.11.3"
+version = "0.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3c80231409c20246a13fddb31776fb942c38553c51e871f8cbd687a4cfb5843d"
+checksum = "135ace3a761e564ec88c03a77317a7c6b80bb7f7135ef2544dbe054243b89737"
 dependencies = [
- "phf_shared",
- "rand",
+ "fastrand",
+ "phf_shared 0.13.1",
 ]
 
 [[package]]
 name = "phf_macros"
-version = "0.11.3"
+version = "0.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f84ac04429c13a7ff43785d75ad27569f2951ce0ffd30a3321230db2fc727216"
+checksum = "812f032b54b1e759ccd5f8b6677695d5268c588701effba24601f6932f8269ef"
 dependencies = [
  "phf_generator",
- "phf_shared",
+ "phf_shared 0.13.1",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "phf_shared"
-version = "0.11.3"
+version = "0.12.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "67eabc2ef2a60eb7faa00097bd1ffdb5bd28e62bf39990626a582201b7a754e5"
+checksum = "06005508882fb681fd97892ecff4b7fd0fee13ef1aa569f8695dae7ab9099981"
+dependencies = [
+ "siphasher",
+]
+
+[[package]]
+name = "phf_shared"
+version = "0.13.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e57fef6bc5981e38c2ce2d63bfa546861309f875b8a75f092d1d54ae2d64f266"
 dependencies = [
  "siphasher",
 ]
 
 [[package]]
 name = "pin-project-lite"
-version = "0.2.16"
+version = "0.2.17"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3b3cff922bd51709b605d9ead9aa71031d81447142d828eb4a6eba76fe619f9b"
+checksum = "a89322df9ebe1c1578d689c92318e070967d1042b512afbe49518723f4e6d5cd"
 
 [[package]]
 name = "pin-utils"
@@ -2489,7 +2431,7 @@ version = "0.45.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0c0af18ae021b0396c42f39396146332957ebc4d4d25d931b4fe73509948f348"
 dependencies = [
- "getrandom 0.2.16",
+ "getrandom 0.2.17",
  "polars-arrow",
  "polars-core",
  "polars-error",
@@ -2518,8 +2460,8 @@ dependencies = [
  "dyn-clone",
  "either",
  "ethnum",
- "getrandom 0.2.16",
- "hashbrown 0.15.2",
+ "getrandom 0.2.17",
+ "hashbrown 0.15.5",
  "itoap",
  "lz4",
  "multiversion",
@@ -2576,15 +2518,15 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "4794a9e38ef2faf7e47a6f736c7f156c6fbb66cd529f82593b2d48348e422c8d"
 dependencies = [
  "ahash",
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "bytemuck",
  "chrono",
  "chrono-tz",
  "comfy-table",
  "either",
  "hashbrown 0.14.5",
- "hashbrown 0.15.2",
- "indexmap 2.9.0",
+ "hashbrown 0.15.5",
+ "indexmap 2.13.0",
  "itoa",
  "ndarray",
  "num-traits",
@@ -2600,7 +2542,7 @@ dependencies = [
  "rayon",
  "regex",
  "strum_macros 0.26.4",
- "thiserror 2.0.12",
+ "thiserror 2.0.18",
  "version_check",
  "xxhash-rust",
 ]
@@ -2614,7 +2556,7 @@ dependencies = [
  "polars-arrow-format",
  "regex",
  "simdutf8",
- "thiserror 2.0.12",
+ "thiserror 2.0.18",
 ]
 
 [[package]]
@@ -2624,8 +2566,8 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ad56c5ea4d6e0546fbc3fa35918a537b76587600a5118770ed331136249d50d8"
 dependencies = [
  "ahash",
- "bitflags 2.9.0",
- "hashbrown 0.15.2",
+ "bitflags 2.11.0",
+ "hashbrown 0.15.5",
  "num-traits",
  "once_cell",
  "polars-arrow",
@@ -2656,7 +2598,7 @@ dependencies = [
  "flate2",
  "futures",
  "glob",
- "hashbrown 0.15.2",
+ "hashbrown 0.15.5",
  "home",
  "itoa",
  "memchr",
@@ -2691,8 +2633,8 @@ dependencies = [
  "ahash",
  "chrono",
  "fallible-streaming-iterator",
- "hashbrown 0.15.2",
- "indexmap 2.9.0",
+ "hashbrown 0.15.5",
+ "indexmap 2.13.0",
  "itoa",
  "num-traits",
  "polars-arrow",
@@ -2711,7 +2653,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "fa457bfa96f45cf14c33507eaa3ebcec6a8d52e7f7fc60cd23f338631369d417"
 dependencies = [
  "ahash",
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "memchr",
  "once_cell",
  "polars-arrow",
@@ -2756,14 +2698,14 @@ checksum = "b267480495ffe382dab63318e3c6bf4073bb82971c8b80294d079293fece458b"
 dependencies = [
  "ahash",
  "argminmax",
- "base64 0.22.1",
+ "base64",
  "bytemuck",
  "chrono",
  "chrono-tz",
  "either",
- "hashbrown 0.15.2",
+ "hashbrown 0.15.5",
  "hex",
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "memchr",
  "num-traits",
  "polars-arrow",
@@ -2774,7 +2716,7 @@ dependencies = [
  "polars-utils",
  "rayon",
  "regex",
- "regex-syntax 0.8.5",
+ "regex-syntax",
  "strum_macros 0.26.4",
  "unicode-reverse",
  "version_check",
@@ -2788,11 +2730,11 @@ checksum = "20237f232b1a74b1fae6b5c9bea8c440f2e5d3b5506601b038f0a7a34b84b710"
 dependencies = [
  "ahash",
  "async-stream",
- "base64 0.22.1",
+ "base64",
  "bytemuck",
  "ethnum",
  "futures",
- "hashbrown 0.15.2",
+ "hashbrown 0.15.5",
  "num-traits",
  "polars-arrow",
  "polars-compute",
@@ -2822,7 +2764,7 @@ dependencies = [
  "crossbeam-channel",
  "crossbeam-queue",
  "enum_dispatch",
- "hashbrown 0.15.2",
+ "hashbrown 0.15.5",
  "num-traits",
  "polars-arrow",
  "polars-compute",
@@ -2845,13 +2787,13 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "99a3832887671df1eb326df52cbfcc47789d3d58454c1084a154b48b240175e2"
 dependencies = [
  "ahash",
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "bytemuck",
  "bytes",
  "chrono",
  "chrono-tz",
  "either",
- "hashbrown 0.15.2",
+ "hashbrown 0.15.5",
  "memmap2",
  "num-traits",
  "once_cell",
@@ -2876,7 +2818,7 @@ version = "0.45.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8e36350fb8a90238e02c8ece0f0c4c24f3374197e9c08c1c22cc8b9c526e6c25"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "bytemuck",
  "polars-arrow",
  "polars-compute",
@@ -2890,7 +2832,7 @@ version = "0.45.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8c6aa4913cffc522cea3ccbc0cafb350bec18fed0a1ef8d417ac88ea320d7749"
 dependencies = [
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "polars-error",
  "polars-utils",
  "version_check",
@@ -2980,8 +2922,8 @@ dependencies = [
  "bytemuck",
  "bytes",
  "compact_str",
- "hashbrown 0.15.2",
- "indexmap 2.9.0",
+ "hashbrown 0.15.5",
+ "indexmap 2.13.0",
  "libc",
  "memmap2",
  "num-traits",
@@ -2997,19 +2939,28 @@ dependencies = [
 
 [[package]]
 name = "portable-atomic"
-version = "1.11.0"
+version = "1.13.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "350e9b48cbc6b0e028b0473b114454c6316e57336ee184ceab6e53f72c178b3e"
+checksum = "c33a9471896f1c69cecef8d20cbe2f7accd12527ce60845ff44c153bb2a21b49"
 
 [[package]]
 name = "portable-atomic-util"
-version = "0.2.4"
+version = "0.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d8a2f0d8d040d7848a709caf78912debcc3f33ee4b3cac47d73d1e1069e83507"
+checksum = "091397be61a01d4be58e7841595bd4bfedb15f1cd54977d79b8271e94ed799a3"
 dependencies = [
  "portable-atomic",
 ]
 
+[[package]]
+name = "potential_utf"
+version = "0.1.4"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b73949432f5e2a09657003c25bca5e19a0e9c84f8058ca374f49e0ebe605af77"
+dependencies = [
+ "zerovec",
+]
+
 [[package]]
 name = "powerfmt"
 version = "0.2.0"
@@ -3022,14 +2973,24 @@ version = "0.2.21"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "85eae3c4ed2f50dcfe72643da4befc30deadb458a9b590d720cde2f2b1e97da9"
 dependencies = [
- "zerocopy 0.8.25",
+ "zerocopy",
+]
+
+[[package]]
+name = "prettyplease"
+version = "0.2.37"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "479ca8adacdd7ce8f1fb39ce9ecccbfe93a3f1344b3d0d97f20bc0196208f62b"
+dependencies = [
+ "proc-macro2",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "proc-macro-crate"
-version = "3.3.0"
+version = "3.5.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "edce586971a4dfaa28950c6f18ed55e0406c1ab88bbce2c6f6293a7aaba73d35"
+checksum = "e67ba7e9b2b56446f1d419b1d807906278ffa1a658a8a5d8a39dcb1f5a78614f"
 dependencies = [
  "toml_edit",
 ]
@@ -3053,41 +3014,48 @@ dependencies = [
  "proc-macro-error-attr2",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.95"
+version = "1.0.106"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "02b3e5e68a3a1a02aad3ec490a98007cbc13c37cbe84a3cd7b8e406d76e7f778"
+checksum = "8fd00f0bb2e90d81d1044c2b32617f68fcb9fa3bb7640c23e9c748e53fb30934"
 dependencies = [
  "unicode-ident",
 ]
 
 [[package]]
 name = "psm"
-version = "0.1.26"
+version = "0.1.30"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6e944464ec8536cd1beb0bbfd96987eb5e3b72f2ecdafdc5c769a37f1fa2ae1f"
+checksum = "3852766467df634d74f0b2d7819bf8dc483a0eb2e3b0f50f756f9cfe8b0d18d8"
 dependencies = [
+ "ar_archive_writer",
  "cc",
 ]
 
 [[package]]
 name = "quote"
-version = "1.0.40"
+version = "1.0.45"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1885c039570dc00dcb4ff087a89e185fd56bae234ddc7f056a945bf36467248d"
+checksum = "41f2619966050689382d2b44f664f4bc593e129785a36d6ee376ddf37259b924"
 dependencies = [
  "proc-macro2",
 ]
 
 [[package]]
 name = "r-efi"
-version = "5.2.0"
+version = "5.3.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "69cdb34c158ceb288df11e18b4bd39de994f6657d83847bdffdbd7f346754b0f"
+
+[[package]]
+name = "r-efi"
+version = "6.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "74765f6d916ee2faa39bc8e68e4f3ed8949b48cccdac59983d287a7cb71ce9c5"
+checksum = "f8dcc9c7d52a811697d2151c701e0d08956f92b0e24136cf4cf27b57a6a0d9bf"
 
 [[package]]
 name = "rand"
@@ -3116,7 +3084,7 @@ version = "0.6.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "ec0be4795e2f6a28069bec0b5ff3e2ac9bafc99e6a9a7dc3547996c5c816922c"
 dependencies = [
- "getrandom 0.2.16",
+ "getrandom 0.2.17",
 ]
 
 [[package]]
@@ -3129,13 +3097,31 @@ dependencies = [
  "rand",
 ]
 
+[[package]]
+name = "random_color"
+version = "0.8.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0085421bc527effa7ed6d46bac0a28734663c47abe03d80a5e78e441fad85196"
+dependencies = [
+ "rand",
+]
+
+[[package]]
+name = "range-map"
+version = "0.2.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "12a5a2d6c7039059af621472a4389be1215a816df61aa4d531cfe85264aee95f"
+dependencies = [
+ "num-traits",
+]
+
 [[package]]
 name = "raw-cpuid"
-version = "11.5.0"
+version = "11.6.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c6df7ab838ed27997ba19a4664507e6f82b41fe6e20be42929332156e5e85146"
+checksum = "498cd0dc59d73224351ee52a95fee0f1a617a2eae0e7d9d720cc622c73a54186"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
 ]
 
 [[package]]
@@ -3146,9 +3132,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3"
 
 [[package]]
 name = "rayon"
-version = "1.10.0"
+version = "1.11.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b418a60154510ca1a002a752ca9714984e21e4241e804d32555251faf8b78ffa"
+checksum = "368f01d005bf8fd9b1206fb6fa653e6c4a81ceb1466406b81792d87c5677a58f"
 dependencies = [
  "either",
  "rayon-core",
@@ -3156,9 +3142,9 @@ dependencies = [
 
 [[package]]
 name = "rayon-core"
-version = "1.12.1"
+version = "1.13.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2"
+checksum = "22e18b0f0062d30d4230b2e85ff77fdfe4326feb054b9783a3460d8435c8ab91"
 dependencies = [
  "crossbeam-deque",
  "crossbeam-utils",
@@ -3181,81 +3167,66 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "76009fbe0614077fc1a2ce255e3a1881a2e3a3527097d5dc6d8212c585e7e38b"
 dependencies = [
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "redox_syscall"
-version = "0.5.11"
+version = "0.5.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d2f103c6d277498fbceb16e84d317e2a400f160f46904d5f5410848c829511a3"
+checksum = "ed2bf2547551a7053d6fdfafda3f938979645c44812fbfcda098faae3f1a362d"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
 ]
 
 [[package]]
 name = "ref-cast"
-version = "1.0.24"
+version = "1.0.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4a0ae411dbe946a674d89546582cea4ba2bb8defac896622d6496f14c23ba5cf"
+checksum = "f354300ae66f76f1c85c5f84693f0ce81d747e2c3f21a45fef496d89c960bf7d"
 dependencies = [
  "ref-cast-impl",
 ]
 
 [[package]]
 name = "ref-cast-impl"
-version = "1.0.24"
+version = "1.0.25"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1165225c21bff1f3bbce98f5a1f889949bc902d3575308cc7b0de30b4f6d27c7"
+checksum = "b7186006dcb21920990093f30e3dea63b7d6e977bf1256be20c3563a5db070da"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "regex"
-version = "1.11.1"
+version = "1.12.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b544ef1b4eac5dc2db33ea63606ae9ffcfac26c1416a2806ae0bf5f56b201191"
+checksum = "e10754a14b9137dd7b1e3e5b0493cc9171fdd105e0ab477f51b72e7f3ac0e276"
 dependencies = [
  "aho-corasick",
  "memchr",
- "regex-automata 0.4.9",
- "regex-syntax 0.8.5",
+ "regex-automata",
+ "regex-syntax",
 ]
 
 [[package]]
 name = "regex-automata"
-version = "0.1.10"
+version = "0.4.14"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c230d73fb8d8c1b9c0b3135c5142a8acee3a0558fb8db5cf1cb65f8d7862132"
-dependencies = [
- "regex-syntax 0.6.29",
-]
-
-[[package]]
-name = "regex-automata"
-version = "0.4.9"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "809e8dc61f6de73b46c85f4c96486310fe304c434cfa43669d7b40f711150908"
+checksum = "6e1dd4122fc1595e8162618945476892eefca7b88c52820e74af6262213cae8f"
 dependencies = [
  "aho-corasick",
  "memchr",
- "regex-syntax 0.8.5",
+ "regex-syntax",
 ]
 
 [[package]]
 name = "regex-syntax"
-version = "0.6.29"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f162c6dd7b008981e4d40210aca20b4bd0f9b60ca9271061b07f78537722f2e1"
-
-[[package]]
-name = "regex-syntax"
-version = "0.8.5"
+version = "0.8.10"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2b15c43186be67a4fd63bee50d0303afffcef381492ebe2c5d87f324e1b8815c"
+checksum = "dc897dd8d9e8bd1ed8cdad82b5966c3e0ecae09fb1907d58efaa013543185d0a"
 
 [[package]]
 name = "ring"
@@ -3265,7 +3236,7 @@ checksum = "a4689e6c2294d81e88dc6261c768b63bc4fcdb852be6d1352498b114f61383b7"
 dependencies = [
  "cc",
  "cfg-if",
- "getrandom 0.2.16",
+ "getrandom 0.2.17",
  "libc",
  "untrusted",
  "windows-sys 0.52.0",
@@ -3292,19 +3263,13 @@ dependencies = [
 
 [[package]]
 name = "rust-lapper"
-version = "1.1.0"
+version = "1.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ee43d8e721ac803031dbab6a944b957b49a3b11eadbc099880c8aaaebf23ed27"
+checksum = "2274b9cc4f205bc0945b7be3e4fc1a102b0b7119ba6482faaedb9c4f76dde5d1"
 dependencies = [
  "num-traits",
 ]
 
-[[package]]
-name = "rustc-demangle"
-version = "0.1.24"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "719b953e2095829ee67db738b3bfa9fa368c94900df327b3f07fe6e794d2fe1f"
-
 [[package]]
 name = "rustc-hash"
 version = "1.1.0"
@@ -3322,35 +3287,22 @@ dependencies = [
 
 [[package]]
 name = "rustix"
-version = "0.38.44"
+version = "1.1.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fdb5bc1ae2baa591800df16c9ca78619bf65c0488b41b96ccec5d11220d8c154"
+checksum = "b6fe4565b9518b83ef4f91bb47ce29620ca828bd32cb7e408f0062e9930ba190"
 dependencies = [
- "bitflags 2.9.0",
+ "bitflags 2.11.0",
  "errno",
  "libc",
- "linux-raw-sys 0.4.15",
- "windows-sys 0.59.0",
-]
-
-[[package]]
-name = "rustix"
-version = "1.0.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d97817398dd4bb2e6da002002db259209759911da105da92bec29ccb12cf58bf"
-dependencies = [
- "bitflags 2.9.0",
- "errno",
- "libc",
- "linux-raw-sys 0.9.4",
- "windows-sys 0.59.0",
+ "linux-raw-sys",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "rustls"
-version = "0.23.26"
+version = "0.23.37"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "df51b5869f3a441595eac5e8ff14d486ff285f7b8c0df8770e49c3b56351f0f0"
+checksum = "758025cb5fccfd3bc2fd74708fd4682be41d99e5dff73c377c0646c6012c73a4"
 dependencies = [
  "log",
  "once_cell",
@@ -3362,25 +3314,19 @@ dependencies = [
 ]
 
 [[package]]
-name = "rustls-pemfile"
-version = "2.2.0"
+name = "rustls-pki-types"
+version = "1.14.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dce314e5fee3f39953d46bb63bb8a46d40c2f8fb7cc5a3b6cab2bde9721d6e50"
+checksum = "be040f8b0a225e40375822a563fa9524378b9d63112f53e19ffff34df5d33fdd"
 dependencies = [
- "rustls-pki-types",
+ "zeroize",
 ]
 
-[[package]]
-name = "rustls-pki-types"
-version = "1.11.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "917ce264624a4b4db1c364dcc35bfca9ded014d0a958cd47ad3e960e988ea51c"
-
 [[package]]
 name = "rustls-webpki"
-version = "0.103.1"
+version = "0.103.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fef8b8769aaccf73098557a87cd1816b4f9c7c16811c9c77142aa695c16f2c03"
+checksum = "d7df23109aa6c1567d1c575b9952556388da57401e4ace1d15f79eedad0d8f53"
 dependencies = [
  "ring",
  "rustls-pki-types",
@@ -3389,15 +3335,15 @@ dependencies = [
 
 [[package]]
 name = "rustversion"
-version = "1.0.20"
+version = "1.0.22"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eded382c5f5f786b989652c49544c4877d9f015cc22e145a5ea8ea66c2921cd2"
+checksum = "b39cdef0fa800fc44525c84ccb54a029961a8215f9619753635a9c0d2538d46d"
 
 [[package]]
 name = "ryu"
-version = "1.0.20"
+version = "1.0.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "28d3b2b1366ec20994f1fd18c3c594f05c5dd4bc44d8bb0c1c632c8d6829481f"
+checksum = "9774ba4a74de5f7b1c1451ed6cd5285a32eddb5cccb8cc655a4e50009e06477f"
 
 [[package]]
 name = "safe_arch"
@@ -3416,9 +3362,9 @@ checksum = "94143f37725109f92c262ed2cf5e59bce7498c01bcc1502d7b9afe439a4e9f49"
 
 [[package]]
 name = "semver"
-version = "1.0.26"
+version = "1.0.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "56e6fa9c48d24d85fb3de5ad847117517440f6beceb7798af16b4a87d616b8d0"
+checksum = "d767eb0aabc880b29956c35734170f26ed551a859dbd361d140cdbeca61ab1e2"
 
 [[package]]
 name = "seq_geom_parser"
@@ -3449,34 +3395,45 @@ dependencies = [
 
 [[package]]
 name = "serde"
-version = "1.0.219"
+version = "1.0.228"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5f0e2c6ed6606019b4e29e69dbaba95b11854410e5347d525002456dbbb786b6"
+checksum = "9a8e94ea7f378bd32cbbd37198a4a91436180c5bb472411e48b5ec2e2124ae9e"
+dependencies = [
+ "serde_core",
+ "serde_derive",
+]
+
+[[package]]
+name = "serde_core"
+version = "1.0.228"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "41d385c7d4ca58e59fc732af25c3983b67ac852c1a25000afe1175de458b67ad"
 dependencies = [
  "serde_derive",
 ]
 
 [[package]]
 name = "serde_derive"
-version = "1.0.219"
+version = "1.0.228"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5b0276cf7f2c73365f7157c8123c21cd9a50fbbd844757af28ca1f5925fc2a00"
+checksum = "d540f220d3187173da220f885ab66608367b6574e925011a9353e4badda91d79"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "serde_json"
-version = "1.0.140"
+version = "1.0.149"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "20068b6e96dc6c9bd23e01df8827e6c7e1f2fddd43c21810382803c136b99373"
+checksum = "83fc039473c5595ace860d8c4fafa220ff474b3fc6bfdb4293327f1a37e94d86"
 dependencies = [
  "itoa",
  "memchr",
- "ryu",
  "serde",
+ "serde_core",
+ "zmij",
 ]
 
 [[package]]
@@ -3504,9 +3461,9 @@ dependencies = [
 
 [[package]]
 name = "sha2"
-version = "0.10.8"
+version = "0.10.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "793db75ad2bcafc3ffa7c68b215fee268f537982cd901d132f89c6343f3a3dc8"
+checksum = "a7507d819769d01a365ab707794a4084392c824f54a7a6a7862f8c3d0892b283"
 dependencies = [
  "cfg-if",
  "cpufeatures",
@@ -3540,9 +3497,9 @@ checksum = "0fda2ff0d084019ba4d7c6f371c95d8fd75ce3524c3cb8fb653a3023f6323e64"
 
 [[package]]
 name = "simba"
-version = "0.9.0"
+version = "0.9.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b3a386a501cd104797982c15ae17aafe8b9261315b5d07e3ec803f2ea26be0fa"
+checksum = "c99284beb21666094ba2b75bbceda012e610f5479dfcc2d6e2426f53197ffd95"
 dependencies = [
  "approx",
  "num-complex",
@@ -3551,6 +3508,12 @@ dependencies = [
  "wide",
 ]
 
+[[package]]
+name = "simd-adler32"
+version = "0.3.8"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "e320a6c5ad31d271ad523dcf3ad13e2767ad8b1cb8f047f75a8aeaf8da139da2"
+
 [[package]]
 name = "simd-json"
 version = "0.14.3"
@@ -3558,7 +3521,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "aa2bcf6c6e164e81bc7a5d49fc6988b3d515d9e8c07457d7b74ffb9324b9cd40"
 dependencies = [
  "ahash",
- "getrandom 0.2.16",
+ "getrandom 0.2.17",
  "halfbrown",
  "once_cell",
  "ref-cast",
@@ -3576,7 +3539,7 @@ checksum = "e3a9fe34e3e7a50316060351f37187a3f546bce95496156754b601a5fa71b76e"
 
 [[package]]
 name = "simpleaf"
-version = "0.19.5"
+version = "0.20.0"
 dependencies = [
  "af-anndata",
  "anyhow",
@@ -3592,7 +3555,7 @@ dependencies = [
  "jrsonnet-evaluator",
  "jrsonnet-parser",
  "niffler",
- "phf",
+ "phf 0.13.1",
  "regex",
  "roers",
  "semver",
@@ -3601,10 +3564,10 @@ dependencies = [
  "serde",
  "serde_json",
  "strum",
- "strum_macros 0.27.1",
+ "strum_macros 0.28.0",
  "tabled",
  "tempfile",
- "thiserror 2.0.12",
+ "thiserror 2.0.18",
  "time",
  "tracing",
  "tracing-subscriber",
@@ -3614,42 +3577,39 @@ dependencies = [
 
 [[package]]
 name = "siphasher"
-version = "1.0.1"
+version = "1.0.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "56199f7ddabf13fe5074ce809e7d3f42b42ae711800501b5b16ea82ad029c39d"
+checksum = "b2aa850e253778c88a04c3d7323b043aeda9d3e30d5971937c1855769763678e"
 
 [[package]]
 name = "slab"
-version = "0.4.9"
+version = "0.4.12"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8f92a496fb766b417c996b9c5e57daf2f7ad3b0bebe1ccfca4856390e3d3bb67"
-dependencies = [
- "autocfg",
-]
+checksum = "0c790de23124f9ab44544d7ac05d60440adc586479ce501c1d6d7da3cd8c9cf5"
 
 [[package]]
 name = "slotmap"
-version = "1.0.7"
+version = "1.1.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "dbff4acf519f630b3a3ddcfaea6c06b42174d9a44bc70c620e9ed1649d58b82a"
+checksum = "bdd58c3c93c3d278ca835519292445cb4b0d4dc59ccfdf7ceadaab3f8aeb4038"
 dependencies = [
  "version_check",
 ]
 
 [[package]]
 name = "smallvec"
-version = "1.15.0"
+version = "1.15.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8917285742e9f3e1683f0a9c4e6b57960b7314d0b08d30d1ecd426713ee2eee9"
+checksum = "67b1b7a3b5fe4f1376887184045fcf45c69e92af734b7aaddc05fb777b6fbd03"
 
 [[package]]
 name = "socket2"
-version = "0.5.9"
+version = "0.6.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4f5fd57c80058a56cf5c777ab8a126398ece8e442983605d280a44ce79d0edef"
+checksum = "3a766e1110788c36f4fa1c2b71b387a7815aa65f88ce0229841826633d93723e"
 dependencies = [
  "libc",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -3663,15 +3623,15 @@ dependencies = [
 
 [[package]]
 name = "stable_deref_trait"
-version = "1.2.0"
+version = "1.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a8f112729512f8e442d81f95a8a7ddf2b7c6b8a1a6f509a95864142b30cab2d3"
+checksum = "6ce2be8dc25455e1f91df71bfa12ad37d7af1092ae736f3a6cd0e37bc7810596"
 
 [[package]]
 name = "stacker"
-version = "0.1.21"
+version = "0.1.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cddb07e32ddb770749da91081d8d0ac3a16f1a569a18b20348cd371f5dead06b"
+checksum = "08d74a23609d509411d10e2176dc2a4346e3b4aea2e7b1869f19fdedbc71c013"
 dependencies = [
  "cc",
  "cfg-if",
@@ -3707,48 +3667,20 @@ version = "0.2.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "fe895eb47f22e2ddd4dabc02bce419d2e643c8e3b585c78158b349195bc24d82"
 
-[[package]]
-name = "strsim"
-version = "0.10.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
-
 [[package]]
 name = "strsim"
 version = "0.11.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "7da8b5736845d9f2fcb837ea5d9e2628564b3b043a70948a3f0b778838c5fb4f"
 
-[[package]]
-name = "structdump"
-version = "0.2.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b0570327507bf281d8a6e6b0d4c082b12cb6bcee27efce755aa5efacd44076c1"
-dependencies = [
- "proc-macro2",
- "quote",
- "structdump-derive",
-]
-
-[[package]]
-name = "structdump-derive"
-version = "0.2.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "29cc0b59cfa11f1bceda09a9a7e37e6a6c3138575fd24ade8aa9af6d09aedf28"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 1.0.109",
-]
-
 [[package]]
 name = "strum"
-version = "0.27.1"
+version = "0.28.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "f64def088c51c9510a8579e3c5d67c65349dcf755e5479ad3d010aa6454e2c32"
+checksum = "9628de9b8791db39ceda2b119bbe13134770b56c138ec1d3af810d045c04f9bd"
 dependencies = [
- "phf",
- "strum_macros 0.27.1",
+ "phf 0.13.1",
+ "strum_macros 0.28.0",
 ]
 
 [[package]]
@@ -3761,20 +3693,19 @@ dependencies = [
  "proc-macro2",
  "quote",
  "rustversion",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "strum_macros"
-version = "0.27.1"
+version = "0.28.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c77a8c5abcaf0f9ce05d62342b7d298c346515365c36b673df4ebe3ced01fde8"
+checksum = "ab85eea0270ee17587ed4156089e10b9e6880ee688791d45a905f5b1ca36f664"
 dependencies = [
  "heck",
  "proc-macro2",
  "quote",
- "rustversion",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -3796,24 +3727,35 @@ dependencies = [
 
 [[package]]
 name = "syn"
-version = "2.0.101"
+version = "2.0.117"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ce2b7fc941b3a24138a0a7cf8e858bfc6a992e7978a068a5c760deb0ed43caf"
+checksum = "e665b8803e7b1d2a727f4023456bbbbe74da67099c585258af0ad9c5013b9b99"
 dependencies = [
  "proc-macro2",
  "quote",
  "unicode-ident",
 ]
 
+[[package]]
+name = "syn-dissect-closure"
+version = "0.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "343bae741672e4b94421cbe93f9794ba9a061434272f7e3a29ff43be26be3ac9"
+dependencies = [
+ "proc-macro2",
+ "quote",
+ "syn 2.0.117",
+]
+
 [[package]]
 name = "synstructure"
-version = "0.13.1"
+version = "0.13.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8af7666ab7b6390ab78131fb5b0fce11d6b7a6951602017c35fa82800708971"
+checksum = "728a70f3dbaf5bab7f0c4b1ac8d7ae5ea60a4b5549c8a5914361c99147a709d2"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -3831,9 +3773,9 @@ dependencies = [
 
 [[package]]
 name = "tabled"
-version = "0.19.0"
+version = "0.20.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "228d124371171cd39f0f454b58f73ddebeeef3cef3207a82ffea1c29465aea43"
+checksum = "e39a2ee1fbcd360805a771e1b300f78cc88fec7b8d3e2f71cd37bbf23e725c7d"
 dependencies = [
  "papergrid",
  "tabled_derive",
@@ -3850,7 +3792,7 @@ dependencies = [
  "proc-macro-error2",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -3861,15 +3803,15 @@ checksum = "c1bbb9f3c5c463a01705937a24fdabc5047929ac764b2d5b9cf681c1f5041ed5"
 
 [[package]]
 name = "tempfile"
-version = "3.19.1"
+version = "3.27.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7437ac7763b9b123ccf33c338a5cc1bac6f69b45a136c19bdd8a65e3916435bf"
+checksum = "32497e9a4c7b38532efcdebeef879707aa9f794296a4f0244f6f69e9bc8574bd"
 dependencies = [
  "fastrand",
- "getrandom 0.3.2",
+ "getrandom 0.4.2",
  "once_cell",
- "rustix 1.0.5",
- "windows-sys 0.59.0",
+ "rustix",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
@@ -3883,12 +3825,12 @@ dependencies = [
 
 [[package]]
 name = "terminal_size"
-version = "0.4.2"
+version = "0.4.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "45c6481c4829e4cc63825e62c49186a34538b7b2750b73b266581ffb612fb5ed"
+checksum = "60b8cb979cb11c32ce1603f8137b22262a9d131aaa5c37b5678025f22b8becd0"
 dependencies = [
- "rustix 1.0.5",
- "windows-sys 0.59.0",
+ "rustix",
+ "windows-sys 0.60.2",
 ]
 
 [[package]]
@@ -3897,7 +3839,7 @@ version = "0.3.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0f8daae29995a24f65619e19d8d31dea5b389f3d853d8bf297bbf607cd0014cc"
 dependencies = [
- "unicode-width 0.2.0",
+ "unicode-width 0.2.2",
 ]
 
 [[package]]
@@ -3911,11 +3853,11 @@ dependencies = [
 
 [[package]]
 name = "thiserror"
-version = "2.0.12"
+version = "2.0.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "567b8a2dae586314f7be2a752ec7474332959c6460e02bde30d702a66d488708"
+checksum = "4288b5bcbc7920c07a1149a35cf9590a2aa808e0bc1eafaade0b80947865fbc4"
 dependencies = [
- "thiserror-impl 2.0.12",
+ "thiserror-impl 2.0.18",
 ]
 
 [[package]]
@@ -3926,18 +3868,18 @@ checksum = "4fee6c4efc90059e10f81e6d42c60a18f76588c3d74cb83a0b242a2b6c7504c1"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "thiserror-impl"
-version = "2.0.12"
+version = "2.0.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7f7cf42b4507d8ea322120659672cf1b9dbb93f8f2d4ecfd6e51350ff5b17a1d"
+checksum = "ebc4ee7f67670e9b64d05fa4253e753e016c6c95ff35b89b7941d6b856dec1d5"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -3948,40 +3890,39 @@ checksum = "3bf63baf9f5039dadc247375c29eb13706706cfde997d0330d05aa63a77d8820"
 
 [[package]]
 name = "thread_local"
-version = "1.1.8"
+version = "1.1.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8b9ef9bad013ada3808854ceac7b46812a6465ba368859a37e2100283d2d719c"
+checksum = "f60246a4944f24f6e018aa17cdeffb7818b76356965d03b07d6a9886e8962185"
 dependencies = [
  "cfg-if",
- "once_cell",
 ]
 
 [[package]]
 name = "time"
-version = "0.3.41"
+version = "0.3.47"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8a7619e19bc266e0f9c5e6686659d394bc57973859340060a69221e57dbc0c40"
+checksum = "743bd48c283afc0388f9b8827b976905fb217ad9e647fae3a379a9283c4def2c"
 dependencies = [
  "deranged",
  "itoa",
  "num-conv",
  "powerfmt",
- "serde",
+ "serde_core",
  "time-core",
  "time-macros",
 ]
 
 [[package]]
 name = "time-core"
-version = "0.1.4"
+version = "0.1.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c9e9a38711f559d9e3ce1cdb06dd7c5b8ea546bc90052da6d06bb76da74bb07c"
+checksum = "7694e1cfe791f8d31026952abf09c69ca6f6fa4e1a1229e18988f06a04a12dca"
 
 [[package]]
 name = "time-macros"
-version = "0.2.22"
+version = "0.2.27"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3526739392ec93fd8b359c8e98514cb3e8e021beb4e5f597b00a0221f8ed8a49"
+checksum = "2e70e4c5a0e0a8a4823ad65dfe1a6930e4f4d756dcd9dd7939022b5e8c501215"
 dependencies = [
  "num-conv",
  "time-core",
@@ -3989,9 +3930,9 @@ dependencies = [
 
 [[package]]
 name = "tinystr"
-version = "0.7.6"
+version = "0.8.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9117f5d4db391c1cf6927e7bea3db74b9a1c1add8f7eda9ffd5364f40f57b82f"
+checksum = "42d3e9c45c09de15d06dd8acf5f4e0e399e85927b7f00711024eb7ae10fa4869"
 dependencies = [
  "displaydoc",
  "zerovec",
@@ -3999,24 +3940,23 @@ dependencies = [
 
 [[package]]
 name = "tokio"
-version = "1.44.2"
+version = "1.50.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e6b88822cbe49de4185e3a4cbf8321dd487cf5fe0c5c65695fef6346371e9c48"
+checksum = "27ad5e34374e03cfffefc301becb44e9dc3c17584f414349ebe29ed26661822d"
 dependencies = [
- "backtrace",
  "bytes",
  "libc",
  "mio",
  "pin-project-lite",
  "socket2",
- "windows-sys 0.52.0",
+ "windows-sys 0.61.2",
 ]
 
 [[package]]
 name = "tokio-util"
-version = "0.7.15"
+version = "0.7.18"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "66a539a9ad6d5d281510d5bd368c973d636c02dbf8a67300bfb6b950696ad7df"
+checksum = "9ae9cec805b01e8fc3fd2fe289f89149a9b66dd16786abd8b19cfa7b48cb0098"
 dependencies = [
  "bytes",
  "futures-core",
@@ -4027,26 +3967,39 @@ dependencies = [
 
 [[package]]
 name = "toml_datetime"
-version = "0.6.9"
+version = "1.0.1+spec-1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "3da5db5a963e24bc68be8b17b6fa82814bb22ee8660f192bb182771d498f09a3"
+checksum = "9b320e741db58cac564e26c607d3cc1fdc4a88fd36c879568c07856ed83ff3e9"
+dependencies = [
+ "serde_core",
+]
 
 [[package]]
 name = "toml_edit"
-version = "0.22.26"
+version = "0.25.5+spec-1.1.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "310068873db2c5b3e7659d2cc35d21855dbafa50d1ce336397c666e3cb08137e"
+checksum = "8ca1a40644a28bce036923f6a431df0b34236949d111cc07cb6dca830c9ef2e1"
 dependencies = [
- "indexmap 2.9.0",
+ "indexmap 2.13.0",
  "toml_datetime",
+ "toml_parser",
+ "winnow",
+]
+
+[[package]]
+name = "toml_parser"
+version = "1.0.10+spec-1.1.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "7df25b4befd31c4816df190124375d5a20c6b6921e2cad937316de3fccd63420"
+dependencies = [
  "winnow",
 ]
 
 [[package]]
 name = "tracing"
-version = "0.1.41"
+version = "0.1.44"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "784e0ac535deb450455cbfa28a6f0df145ea1bb7ae51b821cf5e7927fdcfbdd0"
+checksum = "63e71662fa4b2a2c3a26f570f037eb95bb1f85397f3cd8076caed2f026a6d100"
 dependencies = [
  "pin-project-lite",
  "tracing-attributes",
@@ -4055,20 +4008,20 @@ dependencies = [
 
 [[package]]
 name = "tracing-attributes"
-version = "0.1.28"
+version = "0.1.31"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "395ae124c09f9e6918a2310af6038fba074bcf474ac352496d5910dd59a2226d"
+checksum = "7490cfa5ec963746568740651ac6781f701c9c5ea257c58e057f3ba8cf69e8da"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "tracing-core"
-version = "0.1.33"
+version = "0.1.36"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e672c95779cf947c5311f83787af4fa8fffd12fb27e4993211a84bdfd9610f9c"
+checksum = "db97caf9d906fbde555dd62fa95ddba9eecfd14cb388e4f491a66d74cd5fb79a"
 dependencies = [
  "once_cell",
  "valuable",
@@ -4087,14 +4040,14 @@ dependencies = [
 
 [[package]]
 name = "tracing-subscriber"
-version = "0.3.19"
+version = "0.3.23"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e8189decb5ac0fa7bc8b96b7cb9b2701d60d48805aca84a238004d665fcc4008"
+checksum = "cb7f578e5945fb242538965c2d0b04418d38ec25c79d160cd279bf0731c8d319"
 dependencies = [
  "matchers",
  "nu-ansi-term",
  "once_cell",
- "regex",
+ "regex-automata",
  "sharded-slab",
  "smallvec",
  "thread_local",
@@ -4105,9 +4058,9 @@ dependencies = [
 
 [[package]]
 name = "typenum"
-version = "1.18.0"
+version = "1.19.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1dccffe3ce07af9386bfd29e80c0ab1a8205a2fc34e4bcd40364df902cfa8f3f"
+checksum = "562d481066bde0658276a35467c4af00bdc6ee726305698a55b86e61d7ad82bb"
 
 [[package]]
 name = "ucd-trie"
@@ -4117,9 +4070,9 @@ checksum = "2896d95c02a80c6d6a5d6e953d479f5ddf2dfdb6a244441010e373ac0fb88971"
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.18"
+version = "1.0.24"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "5a5f39404a5da50712a4c1eecf25e90dd62b613502b7e925fd4e4d19b5c96512"
+checksum = "e6e4313cd5fcd3dad5cafa179702e2b244f760991f45397d14d4ebf38247da75"
 
 [[package]]
 name = "unicode-reverse"
@@ -4144,9 +4097,15 @@ checksum = "7dd6e30e90baa6f72411720665d41d89b9a3d039dc45b8faea1ddd07f617f6af"
 
 [[package]]
 name = "unicode-width"
-version = "0.2.0"
+version = "0.2.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b4ac048d71ede7ee76d585517add45da530660ef4390e49b098733c6e897f254"
+
+[[package]]
+name = "unicode-xid"
+version = "0.2.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1fc81956842c57dac11422a97c3b8195a1ff727f06e85c84ed2e8aa277c9a0fd"
+checksum = "ebc1c04c71510c7f702b52b7c350734c9ff1295c464a03335b00bb84fc54f853"
 
 [[package]]
 name = "untrusted"
@@ -4156,17 +4115,16 @@ checksum = "8ecb6da28b8a351d773b68d5825ac39017e680750f980f3a1a85cd8dd28a47c1"
 
 [[package]]
 name = "ureq"
-version = "3.0.11"
+version = "3.2.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "b7a3e9af6113ecd57b8c63d3cd76a385b2e3881365f1f489e54f49801d0c83ea"
+checksum = "fdc97a28575b85cfedf2a7e7d3cc64b3e11bd8ac766666318003abbacc7a21fc"
 dependencies = [
- "base64 0.22.1",
+ "base64",
  "cookie_store",
  "flate2",
  "log",
  "percent-encoding",
  "rustls",
- "rustls-pemfile",
  "rustls-pki-types",
  "serde",
  "serde_json",
@@ -4177,11 +4135,11 @@ dependencies = [
 
 [[package]]
 name = "ureq-proto"
-version = "0.4.1"
+version = "0.5.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fadf18427d33828c311234884b7ba2afb57143e6e7e69fda7ee883b624661e36"
+checksum = "d81f9efa9df032be5934a46a068815a10a042b494b6a58cb0a1a97bb5467ed6f"
 dependencies = [
- "base64 0.22.1",
+ "base64",
  "http",
  "httparse",
  "log",
@@ -4189,13 +4147,14 @@ dependencies = [
 
 [[package]]
 name = "url"
-version = "2.5.4"
+version = "2.5.8"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "32f8b686cadd1473f4bd0117a5d28d36b1ade384ea9b5069a1c40aefed7fda60"
+checksum = "ff67a8a4397373c3ef660812acab3268222035010ab8680ec4215f38ba3d0eed"
 dependencies = [
  "form_urlencoded",
  "idna",
  "percent-encoding",
+ "serde",
 ]
 
 [[package]]
@@ -4210,12 +4169,6 @@ version = "0.7.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09cc8ee72d2a9becf2f2febe0205bbed8fc6615b7cb429ad062dc7b7ddd036a9"
 
-[[package]]
-name = "utf16_iter"
-version = "1.0.5"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c8232dd3cdaed5356e0f716d285e4b40b932ac434100fe9b7e0e8e935b9e6246"
-
 [[package]]
 name = "utf8_iter"
 version = "1.0.4"
@@ -4230,11 +4183,13 @@ checksum = "06abde3611657adf66d383f00b093d7faecc7fa57071cce2578660c9f1010821"
 
 [[package]]
 name = "uuid"
-version = "1.16.0"
+version = "1.22.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "458f7a779bf54acc9f347480ac654f68407d3aab21269a6e3c9f922acd9e2da9"
+checksum = "a68d3c8f01c0cfa54a75291d83601161799e4a89a39e0929f4b0354d88757a37"
 dependencies = [
- "getrandom 0.3.2",
+ "getrandom 0.4.2",
+ "js-sys",
+ "wasm-bindgen",
 ]
 
 [[package]]
@@ -4269,50 +4224,46 @@ checksum = "0b928f33d975fc6ad9f86c8f283853ad26bdd5b10b7f1542aa2fa15e2289105a"
 
 [[package]]
 name = "wasi"
-version = "0.11.0+wasi-snapshot-preview1"
+version = "0.11.1+wasi-snapshot-preview1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423"
+checksum = "ccf3ec651a847eb01de73ccad15eb7d99f80485de043efb2f370cd654f4ea44b"
 
 [[package]]
-name = "wasi"
-version = "0.14.2+wasi-0.2.4"
+name = "wasip2"
+version = "1.0.2+wasi-0.2.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "9683f9a5a998d873c0d21fcbe3c083009670149a8fab228644b8bd36b2c48cb3"
+checksum = "9517f9239f02c069db75e65f174b3da828fe5f5b945c4dd26bd25d89c03ebcf5"
 dependencies = [
- "wit-bindgen-rt",
+ "wit-bindgen",
 ]
 
 [[package]]
-name = "wasm-bindgen"
-version = "0.2.100"
+name = "wasip3"
+version = "0.4.0+wasi-0.3.0-rc-2026-01-06"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1edc8929d7499fc4e8f0be2262a241556cfc54a0bea223790e71446f2aab1ef5"
+checksum = "5428f8bf88ea5ddc08faddef2ac4a67e390b88186c703ce6dbd955e1c145aca5"
 dependencies = [
- "cfg-if",
- "once_cell",
- "rustversion",
- "wasm-bindgen-macro",
+ "wit-bindgen",
 ]
 
 [[package]]
-name = "wasm-bindgen-backend"
-version = "0.2.100"
+name = "wasm-bindgen"
+version = "0.2.114"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2f0a0651a5c2bc21487bde11ee802ccaf4c51935d0d3d42a6101f98161700bc6"
+checksum = "6532f9a5c1ece3798cb1c2cfdba640b9b3ba884f5db45973a6f442510a87d38e"
 dependencies = [
- "bumpalo",
- "log",
- "proc-macro2",
- "quote",
- "syn 2.0.101",
+ "cfg-if",
+ "once_cell",
+ "rustversion",
+ "wasm-bindgen-macro",
  "wasm-bindgen-shared",
 ]
 
 [[package]]
 name = "wasm-bindgen-macro"
-version = "0.2.100"
+version = "0.2.114"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7fe63fc6d09ed3792bd0897b314f53de8e16568c2b3f7982f468c0bf9bd0b407"
+checksum = "18a2d50fcf105fb33bb15f00e7a77b772945a2ee45dcf454961fd843e74c18e6"
 dependencies = [
  "quote",
  "wasm-bindgen-macro-support",
@@ -4320,52 +4271,83 @@ dependencies = [
 
 [[package]]
 name = "wasm-bindgen-macro-support"
-version = "0.2.100"
+version = "0.2.114"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8ae87ea40c9f689fc23f209965b6fb8a99ad69aeeb0231408be24920604395de"
+checksum = "03ce4caeaac547cdf713d280eda22a730824dd11e6b8c3ca9e42247b25c631e3"
 dependencies = [
+ "bumpalo",
  "proc-macro2",
  "quote",
- "syn 2.0.101",
- "wasm-bindgen-backend",
+ "syn 2.0.117",
  "wasm-bindgen-shared",
 ]
 
 [[package]]
 name = "wasm-bindgen-shared"
-version = "0.2.100"
+version = "0.2.114"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1a05d73b933a847d6cccdda8f838a22ff101ad9bf93e33684f39c1f5f0eece3d"
+checksum = "75a326b8c223ee17883a4251907455a2431acc2791c98c26279376490c378c16"
 dependencies = [
  "unicode-ident",
 ]
 
+[[package]]
+name = "wasm-encoder"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "990065f2fe63003fe337b932cfb5e3b80e0b4d0f5ff650e6985b1048f62c8319"
+dependencies = [
+ "leb128fmt",
+ "wasmparser",
+]
+
+[[package]]
+name = "wasm-metadata"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "bb0e353e6a2fbdc176932bbaab493762eb1255a7900fe0fea1a2f96c296cc909"
+dependencies = [
+ "anyhow",
+ "indexmap 2.13.0",
+ "wasm-encoder",
+ "wasmparser",
+]
+
+[[package]]
+name = "wasmparser"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "47b807c72e1bac69382b3a6fb3dbe8ea4c0ed87ff5629b8685ae6b9a611028fe"
+dependencies = [
+ "bitflags 2.11.0",
+ "hashbrown 0.15.5",
+ "indexmap 2.13.0",
+ "semver",
+]
+
 [[package]]
 name = "webpki-roots"
-version = "0.26.9"
+version = "1.0.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "29aad86cec885cafd03e8305fd727c418e970a521322c91688414d5b8efba16b"
+checksum = "22cfaf3c063993ff62e73cb4311efde4db1efb31ab78a3e5c457939ad5cc0bed"
 dependencies = [
  "rustls-pki-types",
 ]
 
 [[package]]
 name = "which"
-version = "7.0.3"
+version = "8.0.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "24d643ce3fd3e5b54854602a080f34fb10ab75e0b813ee32d00ca2b44fa74762"
+checksum = "81995fafaaaf6ae47a7d0cc83c67caf92aeb7e5331650ae6ff856f7c0c60c459"
 dependencies = [
- "either",
- "env_home",
- "rustix 1.0.5",
- "winsafe",
+ "libc",
 ]
 
 [[package]]
 name = "wide"
-version = "0.7.32"
+version = "0.7.33"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "41b5576b9a81633f3e8df296ce0063042a73507636cbe956c61133dd7034ab22"
+checksum = "0ce5da8ecb62bcd8ec8b7ea19f69a51275e91299be594ea5cc6ef7819e16cd03"
 dependencies = [
  "bytemuck",
  "safe_arch",
@@ -4389,11 +4371,11 @@ checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
 
 [[package]]
 name = "winapi-util"
-version = "0.1.9"
+version = "0.1.11"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "cf221c93e13a30d793f7645a0e7762c55d169dbb0a49671918a2319d289b10bb"
+checksum = "c2a7b1c03c876122aa43f3020e6c3c3ee5c05081c9a00739faf7503aeba10d22"
 dependencies = [
- "windows-sys 0.59.0",
+ "windows-sys 0.48.0",
 ]
 
 [[package]]
@@ -4408,7 +4390,7 @@ version = "0.57.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "12342cb4d8e3b046f3d80effd474a7a02447231330ef77d71daa6fbc40681143"
 dependencies = [
- "windows-core 0.57.0",
+ "windows-core",
  "windows-targets 0.52.6",
 ]
 
@@ -4418,25 +4400,12 @@ version = "0.57.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "d2ed2439a290666cd67ecce2b0ffaad89c2a56b976b736e6ece670297897832d"
 dependencies = [
- "windows-implement 0.57.0",
- "windows-interface 0.57.0",
- "windows-result 0.1.2",
+ "windows-implement",
+ "windows-interface",
+ "windows-result",
  "windows-targets 0.52.6",
 ]
 
-[[package]]
-name = "windows-core"
-version = "0.61.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "4763c1de310c86d75a878046489e2e5ba02c649d185f21c67d4cf8a56d098980"
-dependencies = [
- "windows-implement 0.60.0",
- "windows-interface 0.59.1",
- "windows-link",
- "windows-result 0.3.2",
- "windows-strings",
-]
-
 [[package]]
 name = "windows-implement"
 version = "0.57.0"
@@ -4445,18 +4414,7 @@ checksum = "9107ddc059d5b6fbfbffdfa7a7fe3e22a226def0b2608f72e9d552763d3e1ad7"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
-]
-
-[[package]]
-name = "windows-implement"
-version = "0.60.0"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a47fddd13af08290e67f4acabf4b459f647552718f683a7b415d290ac744a836"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -4467,25 +4425,14 @@ checksum = "29bee4b38ea3cde66011baa44dba677c432a78593e202392d1e9070cf2a7fca7"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
-]
-
-[[package]]
-name = "windows-interface"
-version = "0.59.1"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "bd9211b69f8dcdfa817bfd14bf1c97c9188afa36f4750130fcdf3f400eca9fa8"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
 name = "windows-link"
-version = "0.1.1"
+version = "0.2.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "76840935b766e1b0a05c0066835fb9ec80071d4c09a16f6bd5f7e655e3c14c38"
+checksum = "f0805222e57f7521d6a62e36fa9163bc891acd422f971defe97d64e70d0a4fe5"
 
 [[package]]
 name = "windows-result"
@@ -4497,48 +4444,48 @@ dependencies = [
 ]
 
 [[package]]
-name = "windows-result"
-version = "0.3.2"
+name = "windows-sys"
+version = "0.48.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c64fd11a4fd95df68efcfee5f44a294fe71b8bc6a91993e2791938abcc712252"
+checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9"
 dependencies = [
- "windows-link",
+ "windows-targets 0.48.5",
 ]
 
 [[package]]
-name = "windows-strings"
-version = "0.4.0"
+name = "windows-sys"
+version = "0.52.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "7a2ba9642430ee452d5a7aa78d72907ebe8cfda358e8cb7918a2050581322f97"
+checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
 dependencies = [
- "windows-link",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
 name = "windows-sys"
-version = "0.48.0"
+version = "0.59.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9"
+checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
 dependencies = [
- "windows-targets 0.48.5",
+ "windows-targets 0.52.6",
 ]
 
 [[package]]
 name = "windows-sys"
-version = "0.52.0"
+version = "0.60.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "282be5f36a8ce781fad8c8ae18fa3f9beff57ec1b52cb3de0789201425d9a33d"
+checksum = "f2f500e4d28234f72040990ec9d39e3a6b950f9f22d3dba18416c35882612bcb"
 dependencies = [
- "windows-targets 0.52.6",
+ "windows-targets 0.53.5",
 ]
 
 [[package]]
 name = "windows-sys"
-version = "0.59.0"
+version = "0.61.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e38bc4d79ed67fd075bcc251a1c39b32a1776bbe92e5bef1f0bf1f8c531853b"
+checksum = "ae137229bcbd6cdf0f7b80a31df61766145077ddf49416a728b02cb3921ff3fc"
 dependencies = [
- "windows-targets 0.52.6",
+ "windows-link",
 ]
 
 [[package]]
@@ -4565,13 +4512,30 @@ dependencies = [
  "windows_aarch64_gnullvm 0.52.6",
  "windows_aarch64_msvc 0.52.6",
  "windows_i686_gnu 0.52.6",
- "windows_i686_gnullvm",
+ "windows_i686_gnullvm 0.52.6",
  "windows_i686_msvc 0.52.6",
  "windows_x86_64_gnu 0.52.6",
  "windows_x86_64_gnullvm 0.52.6",
  "windows_x86_64_msvc 0.52.6",
 ]
 
+[[package]]
+name = "windows-targets"
+version = "0.53.5"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "4945f9f551b88e0d65f3db0bc25c33b8acea4d9e41163edf90dcd0b19f9069f3"
+dependencies = [
+ "windows-link",
+ "windows_aarch64_gnullvm 0.53.1",
+ "windows_aarch64_msvc 0.53.1",
+ "windows_i686_gnu 0.53.1",
+ "windows_i686_gnullvm 0.53.1",
+ "windows_i686_msvc 0.53.1",
+ "windows_x86_64_gnu 0.53.1",
+ "windows_x86_64_gnullvm 0.53.1",
+ "windows_x86_64_msvc 0.53.1",
+]
+
 [[package]]
 name = "windows_aarch64_gnullvm"
 version = "0.48.5"
@@ -4584,6 +4548,12 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "32a4622180e7a0ec044bb555404c800bc9fd9ec262ec147edd5989ccd0c02cd3"
 
+[[package]]
+name = "windows_aarch64_gnullvm"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "a9d8416fa8b42f5c947f8482c43e7d89e73a173cead56d044f6a56104a6d1b53"
+
 [[package]]
 name = "windows_aarch64_msvc"
 version = "0.48.5"
@@ -4596,6 +4566,12 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "09ec2a7bb152e2252b53fa7803150007879548bc709c039df7627cabbd05d469"
 
+[[package]]
+name = "windows_aarch64_msvc"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b9d782e804c2f632e395708e99a94275910eb9100b2114651e04744e9b125006"
+
 [[package]]
 name = "windows_i686_gnu"
 version = "0.48.5"
@@ -4608,12 +4584,24 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "8e9b5ad5ab802e97eb8e295ac6720e509ee4c243f69d781394014ebfe8bbfa0b"
 
+[[package]]
+name = "windows_i686_gnu"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "960e6da069d81e09becb0ca57a65220ddff016ff2d6af6a223cf372a506593a3"
+
 [[package]]
 name = "windows_i686_gnullvm"
 version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "0eee52d38c090b3caa76c563b86c3a4bd71ef1a819287c19d586d7334ae8ed66"
 
+[[package]]
+name = "windows_i686_gnullvm"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "fa7359d10048f68ab8b09fa71c3daccfb0e9b559aed648a8f95469c27057180c"
+
 [[package]]
 name = "windows_i686_msvc"
 version = "0.48.5"
@@ -4626,6 +4614,12 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "240948bc05c5e7c6dabba28bf89d89ffce3e303022809e73deaefe4f6ec56c66"
 
+[[package]]
+name = "windows_i686_msvc"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "1e7ac75179f18232fe9c285163565a57ef8d3c89254a30685b57d83a38d326c2"
+
 [[package]]
 name = "windows_x86_64_gnu"
 version = "0.48.5"
@@ -4638,6 +4632,12 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "147a5c80aabfbf0c7d901cb5895d1de30ef2907eb21fbbab29ca94c5b08b1a78"
 
+[[package]]
+name = "windows_x86_64_gnu"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9c3842cdd74a865a8066ab39c8a7a473c0778a3f29370b5fd6b4b9aa7df4a499"
+
 [[package]]
 name = "windows_x86_64_gnullvm"
 version = "0.48.5"
@@ -4650,6 +4650,12 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "24d5b23dc417412679681396f2b49f3de8c1473deb516bd34410872eff51ed0d"
 
+[[package]]
+name = "windows_x86_64_gnullvm"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "0ffa179e2d07eee8ad8f57493436566c7cc30ac536a3379fdf008f47f6bb7ae1"
+
 [[package]]
 name = "windows_x86_64_msvc"
 version = "0.48.5"
@@ -4662,11 +4668,17 @@ version = "0.52.6"
 source = "registry+https://github.com/rust-lang/crates.io-index"
 checksum = "589f6da84c646204747d1270a2a5661ea66ed1cced2631d546fdfb155959f9ec"
 
+[[package]]
+name = "windows_x86_64_msvc"
+version = "0.53.1"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d6bbff5f0aada427a1e5a6da5f1f98158182f26556f345ac9e04d36d0ebed650"
+
 [[package]]
 name = "winnow"
-version = "0.7.7"
+version = "1.0.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6cb8234a863ea0e8cd7284fcdd4f145233eb00fee02bbdd9861aec44e6477bc5"
+checksum = "a90e88e4667264a994d34e6d1ab2d26d398dcdca8b7f52bec8668957517fc7d8"
 dependencies = [
  "memchr",
 ]
@@ -4683,31 +4695,98 @@ dependencies = [
 ]
 
 [[package]]
-name = "winsafe"
-version = "0.0.19"
+name = "wit-bindgen"
+version = "0.51.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "d7249219f66ced02969388cf2bb044a09756a083d0fab1e566056b04d9fbcaa5"
+dependencies = [
+ "wit-bindgen-rust-macro",
+]
+
+[[package]]
+name = "wit-bindgen-core"
+version = "0.51.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d135d17ab770252ad95e9a872d365cf3090e3be864a34ab46f48555993efc904"
+checksum = "ea61de684c3ea68cb082b7a88508a8b27fcc8b797d738bfc99a82facf1d752dc"
+dependencies = [
+ "anyhow",
+ "heck",
+ "wit-parser",
+]
 
 [[package]]
-name = "wit-bindgen-rt"
-version = "0.39.0"
+name = "wit-bindgen-rust"
+version = "0.51.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6f42320e61fe2cfd34354ecb597f86f413484a798ba44a8ca1165c58d42da6c1"
+checksum = "b7c566e0f4b284dd6561c786d9cb0142da491f46a9fbed79ea69cdad5db17f21"
 dependencies = [
- "bitflags 2.9.0",
+ "anyhow",
+ "heck",
+ "indexmap 2.13.0",
+ "prettyplease",
+ "syn 2.0.117",
+ "wasm-metadata",
+ "wit-bindgen-core",
+ "wit-component",
 ]
 
 [[package]]
-name = "write16"
-version = "1.0.0"
+name = "wit-bindgen-rust-macro"
+version = "0.51.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "d1890f4022759daae28ed4fe62859b1236caebfc61ede2f63ed4e695f3f6d936"
+checksum = "0c0f9bfd77e6a48eccf51359e3ae77140a7f50b1e2ebfe62422d8afdaffab17a"
+dependencies = [
+ "anyhow",
+ "prettyplease",
+ "proc-macro2",
+ "quote",
+ "syn 2.0.117",
+ "wit-bindgen-core",
+ "wit-bindgen-rust",
+]
+
+[[package]]
+name = "wit-component"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "9d66ea20e9553b30172b5e831994e35fbde2d165325bec84fc43dbf6f4eb9cb2"
+dependencies = [
+ "anyhow",
+ "bitflags 2.11.0",
+ "indexmap 2.13.0",
+ "log",
+ "serde",
+ "serde_derive",
+ "serde_json",
+ "wasm-encoder",
+ "wasm-metadata",
+ "wasmparser",
+ "wit-parser",
+]
+
+[[package]]
+name = "wit-parser"
+version = "0.244.0"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "ecc8ac4bc1dc3381b7f59c34f00b67e18f910c2c0f50015669dde7def656a736"
+dependencies = [
+ "anyhow",
+ "id-arena",
+ "indexmap 2.13.0",
+ "log",
+ "semver",
+ "serde",
+ "serde_derive",
+ "serde_json",
+ "unicode-xid",
+ "wasmparser",
+]
 
 [[package]]
 name = "writeable"
-version = "0.5.5"
+version = "0.6.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1e9df38ee2d2c3c5948ea468a8406ff0db0b29ae1ffde1bcf20ef305bcc95c51"
+checksum = "9edde0db4769d2dc68579893f2306b26c6ecfbe0ef499b013d731b7b9247e0b9"
 
 [[package]]
 name = "xxhash-rust"
@@ -4733,22 +4812,12 @@ dependencies = [
  "linked-hash-map",
 ]
 
-[[package]]
-name = "yansi-term"
-version = "0.1.2"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fe5c30ade05e61656247b2e334a031dfd0cc466fadef865bdcdea8d537951bf1"
-dependencies = [
- "winapi",
-]
-
 [[package]]
 name = "yoke"
-version = "0.7.5"
+version = "0.8.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "120e6aef9aa629e3d4f52dc8cc43a015c7724194c97dfaf45180d2daf2b77f40"
+checksum = "72d6e5c6afb84d73944e5cedb052c4680d5657337201555f9f2a16b7406d4954"
 dependencies = [
- "serde",
  "stable_deref_trait",
  "yoke-derive",
  "zerofrom",
@@ -4756,54 +4825,34 @@ dependencies = [
 
 [[package]]
 name = "yoke-derive"
-version = "0.7.5"
+version = "0.8.1"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2380878cad4ac9aac1e2435f3eb4020e8374b5f13c296cb75b4620ff8e229154"
+checksum = "b659052874eb698efe5b9e8cf382204678a0086ebf46982b79d6ca3182927e5d"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
  "synstructure",
 ]
 
 [[package]]
 name = "zerocopy"
-version = "0.7.35"
+version = "0.8.42"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "1b9b4fd18abc82b8136838da5d50bae7bdea537c574d8dc1a34ed098d6c166f0"
+checksum = "f2578b716f8a7a858b7f02d5bd870c14bf4ddbbcf3a4c05414ba6503640505e3"
 dependencies = [
- "zerocopy-derive 0.7.35",
-]
-
-[[package]]
-name = "zerocopy"
-version = "0.8.25"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a1702d9583232ddb9174e01bb7c15a2ab8fb1bc6f227aa1233858c351a3ba0cb"
-dependencies = [
- "zerocopy-derive 0.8.25",
-]
-
-[[package]]
-name = "zerocopy-derive"
-version = "0.7.35"
-source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fa4f8080344d4671fb4e831a13ad1e68092748387dfc4f55e356242fae12ce3e"
-dependencies = [
- "proc-macro2",
- "quote",
- "syn 2.0.101",
+ "zerocopy-derive",
 ]
 
 [[package]]
 name = "zerocopy-derive"
-version = "0.8.25"
+version = "0.8.42"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "28a6e20d751156648aa063f3800b706ee209a32c0b4d9f24be3d980b01be55ef"
+checksum = "7e6cc098ea4d3bd6246687de65af3f920c430e236bee1e3bf2e441463f08a02f"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
 [[package]]
@@ -4823,21 +4872,32 @@ checksum = "d71e5d6e06ab090c67b5e44993ec16b72dcbaabc526db883a360057678b48502"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
  "synstructure",
 ]
 
 [[package]]
 name = "zeroize"
-version = "1.8.1"
+version = "1.8.2"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b97154e67e32c85465826e8bcc1c59429aaaf107c1e4a9e53c8d8ccd5eff88d0"
+
+[[package]]
+name = "zerotrie"
+version = "0.2.3"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "ced3678a2879b30306d323f4542626697a464a97c0a07c9aebf7ebca65cd4dde"
+checksum = "2a59c17a5562d507e4b54960e8569ebee33bee890c70aa3fe7b97e85a9fd7851"
+dependencies = [
+ "displaydoc",
+ "yoke",
+ "zerofrom",
+]
 
 [[package]]
 name = "zerovec"
-version = "0.10.4"
+version = "0.11.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "aa2b893d79df23bfb12d5461018d408ea19dfafe76c2c7ef6d4eba614f8ff079"
+checksum = "6c28719294829477f525be0186d13efa9a3c602f7ec202ca9e353d310fb9a002"
 dependencies = [
  "yoke",
  "zerofrom",
@@ -4846,15 +4906,21 @@ dependencies = [
 
 [[package]]
 name = "zerovec-derive"
-version = "0.10.3"
+version = "0.11.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6eafa6dfb17584ea3e2bd6e76e0cc15ad7af12b09abdd1ca55961bed9b1063c6"
+checksum = "eadce39539ca5cb3985590102671f2567e659fca9666581ad3411d59207951f3"
 dependencies = [
  "proc-macro2",
  "quote",
- "syn 2.0.101",
+ "syn 2.0.117",
 ]
 
+[[package]]
+name = "zmij"
+version = "1.0.21"
+source = "registry+https://github.com/rust-lang/crates.io-index"
+checksum = "b8848ee67ecc8aedbaf3e4122217aff892639231befc6a1b58d29fff4c2cabaa"
+
 [[package]]
 name = "zstd"
 version = "0.13.3"
@@ -4875,9 +4941,9 @@ dependencies = [
 
 [[package]]
 name = "zstd-sys"
-version = "2.0.15+zstd.1.5.7"
+version = "2.0.16+zstd.1.5.7"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "eb81183ddd97d0c74cedf1d50d85c8d08c1b8b68ee863bdee9e706eedba1a237"
+checksum = "91e19ebc2adc8f83e43039e79776e3fda8ca919132d68a1fed6a5faca2683748"
 dependencies = [
  "cc",
  "pkg-config",
diff --git a/Cargo.toml b/Cargo.toml
index c266871..ce8082f 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -50,7 +50,7 @@ clap = { version = "4.5.37", features = [
   "usage",
   "error-context",
 ] }
-cmd_lib = "^1.9.5"
+cmd_lib = "^1.9.6"
 tracing = "0.1.41"
 tracing-subscriber = { version = "0.3.19", default-features = true, features = [
   "env-filter",
@@ -65,17 +65,17 @@ time = { version = "^0.3.41", features = [
   "serde",
   "serde-human-readable",
 ] }
-which = "7.0.3"
-jrsonnet-evaluator = "0.5.0-pre95"
-jrsonnet-cli = "0.5.0-pre95"
-jrsonnet-parser = "0.5.0-pre95"
+which = "8.0.2"
+jrsonnet-evaluator = "=0.5.0-pre97"
+jrsonnet-cli = "=0.5.0-pre97"
+jrsonnet-parser = "=0.5.0-pre97"
 thiserror = "2.0.12"
-phf = { version = "0.11.3", features = ["macros"] }
+phf = { version = "0.13.1", features = ["macros"] }
 chrono = "0.4.40"
-tabled = "0.19.0"
+tabled = "0.20.0"
 csv = "1.3.1"
-strum = { version = "0.27.1", features = ["derive", "phf"] }
-strum_macros = "0.27.1"
+strum = { version = "0.28.0", features = ["derive", "phf"] }
+strum_macros = "0.28.0"
 niffler = { version = "3.0.0", default-features = false, features = ["gz"] }
 flate2 = { version = "1.1.1", default-features = false, features = ["zlib-ng"] }
 blake3 = { version = "1.8.2", features = ["mmap", "serde"] }
diff --git a/bump_and_publish.sh b/bump_and_publish.sh
new file mode 100755
index 0000000..f752f0b
--- /dev/null
+++ b/bump_and_publish.sh
@@ -0,0 +1,392 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+die() {
+    echo "error: $*" >&2
+    exit 1
+}
+
+usage() {
+    cat <<'EOF'
+Usage:
+  ./bump_and_publish.sh <version> [--publish] [--dry-run]
+  ./bump_and_publish.sh [--publish] [--dry-run] <version>
+
+Options:
+  --publish  Publish to crates.io after bumping, committing, tagging, and pushing
+  --dry-run  Show what would be done without modifying tracked files, creating commits or tags, pushing, or publishing
+  -h, --help Show this help message
+EOF
+}
+
+print_cmd() {
+    printf '+'
+    printf ' %q' "$@"
+    printf '\n'
+}
+
+run() {
+    print_cmd "$@"
+    if [[ "$DRY_RUN" == true ]]; then
+        return 0
+    fi
+    "$@"
+}
+
+is_valid_semver() {
+    local version="$1"
+    local semver_regex='^(0|[1-9][0-9]*)\.(0|[1-9][0-9]*)\.(0|[1-9][0-9]*)(-((0|[1-9][0-9]*|[0-9A-Za-z-]*[A-Za-z-][0-9A-Za-z-]*)(\.(0|[1-9][0-9]*|[0-9A-Za-z-]*[A-Za-z-][0-9A-Za-z-]*))*))?(\+([0-9A-Za-z-]+(\.[0-9A-Za-z-]+)*))?$'
+    printf '%s\n' "$version" | grep -Eq "$semver_regex"
+}
+
+split_semver() {
+    local version="$1"
+    local core="$version"
+    local pre=""
+    local major minor patch
+
+    if [[ "$core" == *+* ]]; then
+        core="${core%%+*}"
+    fi
+
+    if [[ "$core" == *-* ]]; then
+        pre="${core#*-}"
+        core="${core%%-*}"
+    fi
+
+    IFS='.' read -r major minor patch <<<"$core"
+    printf '%s\t%s\t%s\t%s\n' "$major" "$minor" "$patch" "$pre"
+}
+
+compare_prerelease() {
+    local left="$1"
+    local right="$2"
+
+    if [[ -z "$left" && -z "$right" ]]; then
+        echo 0
+        return
+    fi
+    if [[ -z "$left" ]]; then
+        echo 1
+        return
+    fi
+    if [[ -z "$right" ]]; then
+        echo -1
+        return
+    fi
+
+    local -a lparts=()
+    local -a rparts=()
+    IFS='.' read -r -a lparts <<<"$left"
+    IFS='.' read -r -a rparts <<<"$right"
+
+    local i
+    local lnum rnum
+    for ((i = 0; i < ${#lparts[@]} || i < ${#rparts[@]}; i++)); do
+        if ((i >= ${#lparts[@]})); then
+            echo -1
+            return
+        fi
+        if ((i >= ${#rparts[@]})); then
+            echo 1
+            return
+        fi
+
+        if [[ "${lparts[$i]}" == "${rparts[$i]}" ]]; then
+            continue
+        fi
+
+        if [[ "${lparts[$i]}" =~ ^(0|[1-9][0-9]*)$ ]]; then
+            lnum=1
+        else
+            lnum=0
+        fi
+        if [[ "${rparts[$i]}" =~ ^(0|[1-9][0-9]*)$ ]]; then
+            rnum=1
+        else
+            rnum=0
+        fi
+
+        if ((lnum == 1 && rnum == 1)); then
+            if ((10#${lparts[$i]} > 10#${rparts[$i]})); then
+                echo 1
+            else
+                echo -1
+            fi
+            return
+        fi
+        if ((lnum == 1 && rnum == 0)); then
+            echo -1
+            return
+        fi
+        if ((lnum == 0 && rnum == 1)); then
+            echo 1
+            return
+        fi
+
+        if [[ "${lparts[$i]}" > "${rparts[$i]}" ]]; then
+            echo 1
+        else
+            echo -1
+        fi
+        return
+    done
+
+    echo 0
+}
+
+compare_semver() {
+    local left="$1"
+    local right="$2"
+
+    local lmaj lmin lpat lpre
+    local rmaj rmin rpat rpre
+    IFS=$'\t' read -r lmaj lmin lpat lpre <<<"$(split_semver "$left")"
+    IFS=$'\t' read -r rmaj rmin rpat rpre <<<"$(split_semver "$right")"
+
+    if ((10#$lmaj > 10#$rmaj)); then
+        echo 1
+        return
+    fi
+    if ((10#$lmaj < 10#$rmaj)); then
+        echo -1
+        return
+    fi
+
+    if ((10#$lmin > 10#$rmin)); then
+        echo 1
+        return
+    fi
+    if ((10#$lmin < 10#$rmin)); then
+        echo -1
+        return
+    fi
+
+    if ((10#$lpat > 10#$rpat)); then
+        echo 1
+        return
+    fi
+    if ((10#$lpat < 10#$rpat)); then
+        echo -1
+        return
+    fi
+
+    compare_prerelease "$lpre" "$rpre"
+}
+
+VERSION=""
+PUBLISH=false
+DRY_RUN=false
+
+while [[ $# -gt 0 ]]; do
+    case "$1" in
+        --publish)
+            PUBLISH=true
+            ;;
+        --dry-run)
+            DRY_RUN=true
+            ;;
+        -h|--help)
+            usage
+            exit 0
+            ;;
+        -*)
+            die "unknown option: $1"
+            ;;
+        *)
+            if [[ -n "$VERSION" ]]; then
+                die "version specified more than once"
+            fi
+            VERSION="$1"
+            ;;
+    esac
+    shift
+done
+
+[[ -n "$VERSION" ]] || {
+    usage
+    exit 1
+}
+
+SCRIPT_DIR="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
+cd "$SCRIPT_DIR"
+
+ROOT_CARGO="Cargo.toml"
+LOCKFILE="Cargo.lock"
+CRATE_NAME="simpleaf"
+TAG="v${VERSION}"
+TMP_TARGET_DIR=""
+MANIFEST_BACKUP=""
+LOCKFILE_BACKUP=""
+MANIFEST_UPDATED=false
+COMMIT_CREATED=false
+
+cleanup() {
+    local status=$?
+
+    if [[ -n "$TMP_TARGET_DIR" && -d "$TMP_TARGET_DIR" ]]; then
+        rm -rf "$TMP_TARGET_DIR"
+    fi
+
+    if [[ "$status" -ne 0 && "$DRY_RUN" == false && "$MANIFEST_UPDATED" == true && "$COMMIT_CREATED" == false ]]; then
+        if [[ -n "$MANIFEST_BACKUP" && -f "$MANIFEST_BACKUP" ]]; then
+            cp "$MANIFEST_BACKUP" "$ROOT_CARGO"
+        fi
+        if [[ -n "$LOCKFILE_BACKUP" && -f "$LOCKFILE_BACKUP" ]]; then
+            cp "$LOCKFILE_BACKUP" "$LOCKFILE"
+        fi
+        echo "restored $ROOT_CARGO and $LOCKFILE after failure" >&2
+    fi
+
+    if [[ -n "$MANIFEST_BACKUP" && -f "$MANIFEST_BACKUP" ]]; then
+        rm -f "$MANIFEST_BACKUP"
+    fi
+    if [[ -n "$LOCKFILE_BACKUP" && -f "$LOCKFILE_BACKUP" ]]; then
+        rm -f "$LOCKFILE_BACKUP"
+    fi
+
+    return "$status"
+}
+
+trap cleanup EXIT
+
+[[ -f "$ROOT_CARGO" ]] || die "not found: $ROOT_CARGO"
+[[ -f "$LOCKFILE" ]] || die "not found: $LOCKFILE"
+git rev-parse --is-inside-work-tree >/dev/null 2>&1 || die "current directory is not a git repository"
+
+is_valid_semver "$VERSION" || die "version '$VERSION' is not valid SemVer 2.0.0"
+
+CURRENT_VERSION="$(
+    awk '
+        /^\[package\]/ { in_package=1; next }
+        in_package && /^\[/ { in_package=0 }
+        in_package && /^[[:space:]]*version[[:space:]]*=/ {
+            match($0, /"[^"]+"/)
+            if (RSTART > 0) {
+                print substr($0, RSTART + 1, RLENGTH - 2)
+                exit
+            }
+        }
+    ' "$ROOT_CARGO"
+)"
+[[ -n "$CURRENT_VERSION" ]] || die "could not determine current crate version from $ROOT_CARGO"
+is_valid_semver "$CURRENT_VERSION" || die "current crate version '$CURRENT_VERSION' is not valid SemVer"
+
+CMP="$(compare_semver "$VERSION" "$CURRENT_VERSION")"
+if [[ "$CMP" -le 0 ]]; then
+    die "new version '$VERSION' must be greater than current version '$CURRENT_VERSION'"
+fi
+
+if git rev-parse "$TAG" >/dev/null 2>&1; then
+    die "tag $TAG already exists"
+fi
+
+if [[ -n "$(git status --porcelain)" ]]; then
+    die "working tree is not clean; commit or stash existing changes first"
+fi
+
+if ! git remote get-url origin >/dev/null 2>&1; then
+    die "git remote 'origin' is not configured"
+fi
+
+echo "Current crate version : $CURRENT_VERSION"
+echo "New crate version     : $VERSION"
+echo "Tag                   : $TAG"
+if [[ "$PUBLISH" == true ]]; then
+    echo "Publish               : yes"
+else
+    echo "Publish               : no"
+fi
+if [[ "$DRY_RUN" == true ]]; then
+    echo "Dry-run               : yes"
+else
+    echo "Dry-run               : no"
+fi
+echo
+
+echo "Preflight checks before changing version"
+cargo check -q
+TMP_TARGET_DIR="$(mktemp -d "${TMPDIR:-/tmp}/simpleaf-release-check.XXXXXX")"
+CARGO_TARGET_DIR="$TMP_TARGET_DIR" cargo package --offline --allow-dirty --no-verify >/dev/null
+rm -rf "$TMP_TARGET_DIR"
+TMP_TARGET_DIR=""
+
+echo "Updating $ROOT_CARGO"
+echo "  version: $CURRENT_VERSION -> $VERSION"
+echo "Updating $LOCKFILE"
+echo "  package entry version: $CURRENT_VERSION -> $VERSION"
+
+if [[ "$DRY_RUN" == false ]]; then
+    MANIFEST_BACKUP="$(mktemp "${TMPDIR:-/tmp}/simpleaf-Cargo.toml.XXXXXX")"
+    LOCKFILE_BACKUP="$(mktemp "${TMPDIR:-/tmp}/simpleaf-Cargo.lock.XXXXXX")"
+    cp "$ROOT_CARGO" "$MANIFEST_BACKUP"
+    cp "$LOCKFILE" "$LOCKFILE_BACKUP"
+
+    sed -i.bak "1,/^version = /s/^version = \".*\"/version = \"${VERSION}\"/" "$ROOT_CARGO"
+    rm -f "${ROOT_CARGO}.bak"
+
+    sed -i.bak "/^name = \"${CRATE_NAME}\"$/,/^dependencies = \\[$/s/^version = \".*\"/version = \"${VERSION}\"/" "$LOCKFILE"
+    rm -f "${LOCKFILE}.bak"
+
+    MANIFEST_UPDATED=true
+else
+    echo "Dry-run: would rewrite $ROOT_CARGO and $LOCKFILE"
+fi
+
+UPDATED_VERSION="$CURRENT_VERSION"
+UPDATED_LOCK_VERSION="$CURRENT_VERSION"
+if [[ "$DRY_RUN" == false ]]; then
+    UPDATED_VERSION="$(
+        awk '
+            /^\[package\]/ { in_package=1; next }
+            in_package && /^\[/ { in_package=0 }
+            in_package && /^[[:space:]]*version[[:space:]]*=/ {
+                match($0, /"[^"]+"/)
+                if (RSTART > 0) {
+                    print substr($0, RSTART + 1, RLENGTH - 2)
+                    exit
+                }
+            }
+        ' "$ROOT_CARGO"
+    )"
+    UPDATED_LOCK_VERSION="$(sed -n "/^name = \"${CRATE_NAME}\"$/,/^dependencies = \\[$/s/^version = \"\(.*\)\"/\1/p" "$LOCKFILE" | head -1)"
+
+    [[ "$UPDATED_VERSION" == "$VERSION" ]] || die "crate version update failed"
+    [[ "$UPDATED_LOCK_VERSION" == "$VERSION" ]] || die "lockfile version update failed"
+fi
+
+echo
+echo "Post-bump validation"
+if [[ "$DRY_RUN" == true ]]; then
+    echo "Dry-run: would run cargo check and cargo package against the bumped version"
+else
+    cargo check -q
+    TMP_TARGET_DIR="$(mktemp -d "${TMPDIR:-/tmp}/simpleaf-release-check.XXXXXX")"
+    CARGO_TARGET_DIR="$TMP_TARGET_DIR" cargo package --offline --allow-dirty --no-verify >/dev/null
+    rm -rf "$TMP_TARGET_DIR"
+    TMP_TARGET_DIR=""
+fi
+
+run git add "$ROOT_CARGO" "$LOCKFILE"
+run git commit -m "chore(release): bump ${CRATE_NAME} to v${VERSION}"
+
+if [[ "$DRY_RUN" == false ]]; then
+    COMMIT_CREATED=true
+fi
+
+run git tag -a "$TAG" -m "Release ${VERSION}"
+run git push origin HEAD
+run git push origin "$TAG"
+
+if [[ "$PUBLISH" == true ]]; then
+    run cargo publish
+else
+    echo "Skipping crates.io publish; re-run with --publish to publish ${CRATE_NAME} v${VERSION}"
+fi
+
+echo
+if [[ "$DRY_RUN" == true ]]; then
+    echo "Dry-run complete"
+else
+    echo "Release bump and publish complete for v${VERSION}"
+fi
diff --git a/docs/requirements.txt b/docs/requirements.txt
index d7d5e5d..1f06e3e 100644
--- a/docs/requirements.txt
+++ b/docs/requirements.txt
@@ -1,4 +1,5 @@
 ####### 
 #
 ###### Custom themes (no version specifiers) ######
-furo
\ No newline at end of file
+sphinx
+furo
diff --git a/docs/source/chemistry-command.rst b/docs/source/chemistry-command.rst
index 0049a45..d2ba7ef 100644
--- a/docs/source/chemistry-command.rst
+++ b/docs/source/chemistry-command.rst
@@ -32,7 +32,7 @@ The ``chemistry`` command provides functionality to manage and inspect custom ch
 These sub-commands are described below.
 
 ``simpleaf chemistry refresh``
------------------------
+-------------------------------
 
 The ``refresh`` sub-command takes no *required* arguments; it's usage is shown below:
 
@@ -81,8 +81,10 @@ Every chemistry added to the registry has three mandatory properties: ``name``,
 - ``name``: A unique name (within the existing registry) of the chemistry. It must be a valid UTF-8 identifier. If the name is already registered, the existing definition will be updated if a higher ``--version`` is provided (see below for details). Otherwise, simpleaf will complain and fail.
 - ``geometry``: The geometry specification must be provided as a quoted string, and must follow the `Sequence Fragment Geometry Description Language <https://hackmd.io/@PI7Og0l1ReeBZu_pjQGUQQ/rJMgmvr13>`_ as used in the `quant command <https://simpleaf.readthedocs.io/en/latest/quant-command.html#a-note-on-the-chemistry-flag>`_. 
 - ``expected-ori``: The expected orientation of the chemistry. It must be one of the following: fw (forward), rc (reverse complement), or both (both orientations). It describes the expected orientation relative to the first (most upstream) mappable biological sequence.
-Imagine we have reads from 10x Chromium 5' protocols with read1s and read2s both of 150 base pairs. With this specification, a read1, which is in the forward orientation, contains, from 5' to 3', a cell barcode, a UMI, a fixed fragment, and a fragment representing the 5' end of the cDNA. A read2, which is in the reverse complementary orientation, contains the second (downstream) cDNA fragment relative to its read1. You can find a detailed explanation of the 10x Chromium 5' protocol from `Single Cell Genomics Library Structure <https://teichlab.github.io/scg_lib_structs/methods_html/10xChromium5.html>`_.
-If we map the biological sequence in read1s and read2s as paired-end reads (currently only supported when using the default mapper -- piscem), as biological read1s are the first mappable sequences, the expected orientation for this chemistry should be ``fw``, the orientation of read1s. However, if we only map read2s, the expected orientation should be ``rc``, because read2s are the first mappable sequences and are in the reverse complementary orientation.
+
+  Imagine we have reads from 10x Chromium 5' protocols with read1s and read2s both of 150 base pairs. With this specification, a read1, which is in the forward orientation, contains, from 5' to 3', a cell barcode, a UMI, a fixed fragment, and a fragment representing the 5' end of the cDNA. A read2, which is in the reverse complementary orientation, contains the second (downstream) cDNA fragment relative to its read1. You can find a detailed explanation of the 10x Chromium 5' protocol from `Single Cell Genomics Library Structure <https://teichlab.github.io/scg_lib_structs/methods_html/10xChromium5.html>`_.
+
+  If we map the biological sequence in read1s and read2s as paired-end reads (currently only supported when using the default mapper -- piscem), as biological read1s are the first mappable sequences, the expected orientation for this chemistry should be ``fw``, the orientation of read1s. However, if we only map read2s, the expected orientation should be ``rc``, because read2s are the first mappable sequences and are in the reverse complementary orientation.
 
 In addition to the required fields, there are 3 optional fields, as described below. A permit list file must be a TSV file without a header, and the first column must contain the sequence of permitted cell barcodes, i.e., the whitelist of cell barcodes.
 
diff --git a/docs/source/flex-quant-command.rst b/docs/source/flex-quant-command.rst
new file mode 100644
index 0000000..853583a
--- /dev/null
+++ b/docs/source/flex-quant-command.rst
@@ -0,0 +1,135 @@
+``flex-quant`` command
+======================
+
+The ``flex-quant`` command runs the end-to-end ``simpleaf`` pipeline for 10x Flex Gene Expression data. Unlike :doc:`/quant-command`, which is designed around standard single-cell RNA-seq chemistries and a single cell-barcode whitelist, ``flex-quant`` handles the extra resources and steps required for Flex assays:
+
+- Flex chemistry lookup from the chemistry registry
+- probe set selection by organism
+- probe-set CSV to FASTA conversion and ``probe_t2g.tsv`` generation
+- probe index construction with ``piscem build`` when needed
+- cell barcode whitelist resolution
+- sample barcode list resolution
+- ``piscem map-scrna``
+- multi-barcode permit-list generation with ``alevin-fry generate-permit-list``
+- ``alevin-fry collate`` and ``alevin-fry quant``
+
+At present, ``flex-quant`` expects a registered Flex chemistry such as ``10x-flexv1-gex-3p`` or ``10x-flexv2-gex-3p`` and requires ``piscem`` plus ``alevin-fry`` to be configured with :doc:`/set-paths`.
+
+Overview
+--------
+
+The command needs:
+
+1. a Flex chemistry name via ``--chemistry``
+2. an organism via ``--organism`` for automatic probe-set selection
+3. paired-end reads via ``--reads1`` and ``--reads2``
+4. an output directory via ``--output``
+
+If the chemistry registry contains the needed metadata, ``simpleaf`` can automatically download and cache the probe set, the cell barcode whitelist, and the sample barcode list. If you already have local resources, you can override these defaults with ``--index``, ``--probe-set``, or ``--sample-bc-list``.
+
+The relevant options (which you can obtain by running ``simpleaf flex-quant -h``) are below:
+
+.. code-block:: console
+
+    quantify a 10x Flex GEX sample (probe-based, multiplexed)
+
+    Usage: simpleaf flex-quant [OPTIONS] --chemistry <CHEMISTRY> --organism <ORGANISM> --output <OUTPUT> --reads1 <READS1> --reads2 <READS2>
+
+    Options:
+      -c, --chemistry <CHEMISTRY>    Chemistry name: 10x-flexv1-gex-3p or 10x-flexv2-gex-3p
+          --organism <ORGANISM>      Target organism for automatic probe set selection [possible values: human, mouse]
+      -o, --output <OUTPUT>          Path to output directory
+      -t, --threads <THREADS>        Number of threads to use [default: 16]
+      -r, --resolution <RESOLUTION>  UMI resolution mode [default: cr-like] [possible values: cr-like, cr-like-em, parsimony, parsimony-em, parsimony-gene, parsimony-gene-em]
+      -h, --help                     Print help
+      -V, --version                  Print version
+
+    Mapping Options:
+      -i, --index <INDEX>    Path to pre-built probe index (overrides auto-build)
+      -1, --reads1 <READS1>  Comma-separated list of R1 FASTQ files
+      -2, --reads2 <READS2>  Comma-separated list of R2 FASTQ files
+
+    Probe Set Options:
+          --probe-set <PROBE_SET>            Path to probe set CSV or FASTA (overrides auto-download)
+          --sample-bc-list <SAMPLE_BC_LIST>  Path to sample/probe barcode file with rotation mapping
+          --kmer-length <KMER_LENGTH>        k-mer length for probe index building [default: 23]
+
+    Piscem Mapping Options:
+          --skipping-strategy <SKIPPING_STRATEGY>  The skipping strategy to use for k-mer collection [default: permissive] [possible values: permissive, strict]
+          --struct-constraints                     If piscem >= 0.7.0, enable structural constraints
+          --max-ec-card <MAX_EC_CARD>             Maximum cardinality equivalence class to examine [default: 4096]
+
+    Permit List Options:
+          --min-reads <MIN_READS>  Minimum read count threshold for unfiltered permit list [default: 10]
+
+Resource resolution
+-------------------
+
+``flex-quant`` resolves resources in the following order:
+
+- Probe index:
+  If ``--index`` is provided, ``simpleaf`` uses that index directly. The command expects a corresponding ``probe_t2g.tsv`` next to the index, unless you also provide ``--probe-set`` so it can generate the t2g mapping.
+- Probe set:
+  If ``--probe-set`` is provided, it overrides the registry entry. A CSV probe set is converted into a FASTA plus ``probe_t2g.tsv`` automatically. A FASTA input is accepted as-is, and ``simpleaf`` generates an identity-style t2g mapping from the FASTA headers.
+- Automatic probe-set selection:
+  If neither ``--index`` nor ``--probe-set`` is provided, ``simpleaf`` looks up the requested ``--organism`` in the selected chemistry's registered probe sets, downloads the matching probe CSV if needed, and builds a cached probe index.
+- Cell barcode whitelist:
+  This is resolved from the selected chemistry's permit-list metadata in the registry.
+- Sample barcode list:
+  This is resolved from ``--sample-bc-list`` if provided, otherwise from the selected chemistry's registry metadata.
+
+Examples
+--------
+
+Use a registry-backed Flex chemistry with automatic resource resolution:
+
+.. code-block:: console
+
+   $ export ALEVIN_FRY_HOME=/path/to/af_home
+   $ simpleaf flex-quant \
+       --chemistry 10x-flexv2-gex-3p \
+       --organism human \
+       --reads1 sample_R1.fastq.gz \
+       --reads2 sample_R2.fastq.gz \
+       --output flex_out
+
+Use local probe-set and sample-barcode files instead of downloading them:
+
+.. code-block:: console
+
+   $ simpleaf flex-quant \
+       --chemistry 10x-flexv1-gex-3p \
+       --organism mouse \
+       --probe-set /path/to/probe_set.csv \
+       --sample-bc-list /path/to/sample_bc.tsv \
+       --reads1 lane1_R1.fastq.gz,lane2_R1.fastq.gz \
+       --reads2 lane1_R2.fastq.gz,lane2_R2.fastq.gz \
+       --output flex_out
+
+Use a pre-built probe index:
+
+.. code-block:: console
+
+   $ simpleaf flex-quant \
+       --chemistry 10x-flexv2-gex-3p \
+       --organism human \
+       --index /path/to/probe_index \
+       --reads1 sample_R1.fastq.gz \
+       --reads2 sample_R2.fastq.gz \
+       --output flex_out
+
+Output
+------
+
+The command creates the requested output directory and writes:
+
+- ``af_map/``: the ``piscem`` mapping output
+- ``af_quant/``: the ``alevin-fry`` permit-list, collate, and quantification output
+- ``simpleaf_flex_quant_info.json``: a metadata record describing the resolved inputs, executed commands, and step timings
+
+Notes
+-----
+
+- ``flex-quant`` is specific to registered Flex GEX chemistries. For standard scRNA-seq chemistries and general custom geometries, use :doc:`/quant-command`.
+- The Flex pipeline currently uses ``piscem`` for mapping.
+- When a probe CSV is converted, all probes are kept in the generated FASTA and t2g mapping so that downstream quantification has a complete reference-to-gene map.
diff --git a/docs/source/index.rst b/docs/source/index.rst
index 4f7533c..2984af1 100644
--- a/docs/source/index.rst
+++ b/docs/source/index.rst
@@ -45,6 +45,7 @@ That's it for initial notes.  Use the menu below to learn more about the `simple
    inspect-command.rst
    index-command.rst
    quant-command.rst
+   flex-quant-command.rst
    refresh-prog-info.rst
    workflow.rst
    LICENSE.rst
diff --git a/docs/source/quant-command.rst b/docs/source/quant-command.rst
index a8f42ac..f9bc56c 100644
--- a/docs/source/quant-command.rst
+++ b/docs/source/quant-command.rst
@@ -1,6 +1,8 @@
 ``quant`` command
 =================
 
+For 10x Flex Gene Expression data, use :doc:`/flex-quant-command` instead. The ``quant`` command documented here covers the standard ``simpleaf`` quantification workflow for non-Flex chemistries.
+
 
 The ``quant`` command takes as input **either**:
   1) the index, reads, and relevant information about the experiment (e.g. the chemistry) OR
@@ -95,4 +97,3 @@ The relevant options (which you can obtain by running ``simpleaf quant -h``) are
 
     Output Options:
           --anndata-out  Generate an anndata (h5ad format) count matrix from the standard (matrix-market format) output
-
diff --git a/docs/source/workflow-get.rst b/docs/source/workflow-get.rst
index d7d61af..69618b7 100644
--- a/docs/source/workflow-get.rst
+++ b/docs/source/workflow-get.rst
@@ -30,8 +30,8 @@ Usually, a published workflow contains four sections:
 For most users, the ``fast_config`` is the only section needed to instantiate the template. To fill the missing information, one just needs to replace the ``null`` with a meaningful value. For more details, please check out dedicated tutorial on `running workflows from an published template <https://combine-lab.github.io/alevin-fry-tutorials/2023/running-simpleaf-workflow/>`_.
 
 
-Full Usage
-^^^^^^^^^^
+Get Usage
+^^^^^^^^^
 
 The relevant options (which you can obtain by running ``simpleaf workflow get -h``) are:
 
@@ -48,4 +48,3 @@ The relevant options (which you can obtain by running ``simpleaf workflow get -h
       -V, --version          Print version
 
 
-
diff --git a/docs/source/workflow-list.rst b/docs/source/workflow-list.rst
index 70c7fcc..b31ab89 100644
--- a/docs/source/workflow-list.rst
+++ b/docs/source/workflow-list.rst
@@ -3,7 +3,7 @@ simpleaf workflow list
 
 ``simpleaf workflow list`` lists all workflows in the registry. If one would like to refresh the registry to keep all workflows up to date, please run the :ref:`simpleaf workflow refresh` command.
 
-Full Usage
+List Usage
 ^^^^^^^^^^
 
 The relevant options (which you can obtain by running ``simpleaf workflow list -h``) are:
@@ -17,4 +17,3 @@ The relevant options (which you can obtain by running ``simpleaf workflow list -
     Options:
     -h, --help     Print help
     -V, --version  Print version
-
diff --git a/docs/source/workflow-refresh.rst b/docs/source/workflow-refresh.rst
index 9dca7f1..1edc9c7 100644
--- a/docs/source/workflow-refresh.rst
+++ b/docs/source/workflow-refresh.rst
@@ -3,8 +3,8 @@ simpleaf workflow refresh
 
 ``simpleaf workflow refresh`` pulls the latest protocol estuary library from `its GitHub repository <https://github.com/COMBINE-lab/protocol-estuary>`_. We recommend updating the registry everytime before fetching a workflow.
 
-Full Usage
-^^^^^^^^^^
+Refresh Usage
+^^^^^^^^^^^^^
 
 The relevant options (which you can obtain by running ``simpleaf workflow refresh -h``) are:
 
@@ -17,4 +17,3 @@ The relevant options (which you can obtain by running ``simpleaf workflow refres
     Options:
     -h, --help     Print help
     -V, --version  Print version
-
diff --git a/resources/chemistries.json b/resources/chemistries.json
index 29b1208..3cb735e 100644
--- a/resources/chemistries.json
+++ b/resources/chemistries.json
@@ -139,7 +139,61 @@
     "version": "0.1.0",
     "meta": {
       "cr_filename": "737K-arc-v1.txt",
-      "barcode_ori": "forward" 
+      "barcode_ori": "forward"
+    }
+  },
+  "10x-flexv1-gex-3p": {
+    "geometry": "1{b[16]u[12]x:}2{r[50]x[18]s[8]x:}",
+    "expected_ori": "both",
+    "version": "0.1.0",
+    "plist_name": "9fe0cbace5ad3cf83679a7b082b99df879d3d4c069d68da313b6650dd18fc803",
+    "remote_url": "https://umd.box.com/shared/static/ocr4rah6xdzan10rfrrggqyat06zea5m",
+    "meta": {
+      "cr_filename": "737K-fixed-rna-profiling.txt",
+      "protocol_type": "flex_gex"
+    },
+    "sample_bc_list": {
+      "plist_name": "5dc9d109e541b02974bbae15682e7198ebc72d3da4f4a219d73620e2852c89e0",
+      "remote_url": "https://umd.box.com/shared/static/o1db4o6021a4nblpci8aume0z0lz5hfd"
+    },
+    "probe_sets": {
+      "human": {
+        "name": "Chromium_Human_Transcriptome_Probe_Set_v1.1.0_GRCh38-2024-A",
+        "plist_name": "9ccbd08d70bcab619be45bd9a1b9c76efdd91030517564e5819e5f74b1d36d93",
+        "remote_url": "https://umd.box.com/shared/static/iygrl8vn798j4dgto9bqop9914wg1n51"
+      },
+      "mouse": {
+        "name": "Chromium_Mouse_Transcriptome_Probe_Set_v1.1.1_GRCm39-2024-A",
+        "plist_name": "b4b811412ef75c33e09b5ec1a8f4028a08f3d0fe470ddf524380526f3cbc2e12",
+        "remote_url": "https://umd.box.com/shared/static/oz6kubjc3rmjeb0e9fi417iui5x9h72b"
+      }
+    }
+  },
+  "10x-flexv2-gex-3p": {
+    "geometry": "1{b[16]u[12]x[10]s[10]}2{r:}",
+    "expected_ori": "both",
+    "version": "0.1.0",
+    "plist_name": "dcb018db2e9d7023ac077eb2477b877163fa5dcef7b8e39e0826bc2560c29cf9",
+    "remote_url": "https://umd.box.com/shared/static/fei8u0tcve2wu73q4qxrskwl3gs7svj1",
+    "meta": {
+      "cr_filename": "737K-flex-v2.txt",
+      "protocol_type": "flex_gex"
+    },
+    "sample_bc_list": {
+      "plist_name": "5e7ef950ad43c35525e8d923423a7bb1abdce78ca2a8fe4ef9a2d69c5f22830b",
+      "remote_url": "https://umd.box.com/shared/static/4ogdlgooo1onjkrny9pfbyz4gdt5vktl"
+    },
+    "probe_sets": {
+      "human": {
+        "name": "Chromium_Human_Transcriptome_Probe_Set_v2.0.0_GRCh38-2024-A",
+        "plist_name": "bfa53e2acde140d6bd90c3b21d65c48c5b04e3064adee7402d3016116db04958",
+        "remote_url": "https://umd.box.com/shared/static/2fd0tda0638wy0fclgh3ywdgul1g53pi"
+      },
+      "mouse": {
+        "name": "Chromium_Mouse_Transcriptome_Probe_Set_v2.0.0_GRCm39-2024-A",
+        "plist_name": "8e0ea460bc5a93df85cf5c4f321c62a3e50ad01b5589a8c0c9559bf554f6f276",
+        "remote_url": "https://umd.box.com/shared/static/z21ofrtnj3t33fb0mti66dc319cgvnuq"
+      }
     }
   }
 }
diff --git a/scripts/test_simpleaf.sh b/scripts/test_simpleaf.sh
index 083d073..74e4328 100755
--- a/scripts/test_simpleaf.sh
+++ b/scripts/test_simpleaf.sh
@@ -29,7 +29,7 @@ function cleanup {
 
 # implementation of script starts here
 echo "  - Downloading the toy read-reference set"
-wget https://umd.box.com/shared/static/lx2xownlrhz3us8496tyu9c4dgade814.gz  -O  ${WORK_DIR}/toy_read_ref_set.tar.gz -q
+wget https://umd.box.com/shared/static/z8d0v1xqi1jznlx1o8u1o2hxs1n4z1fl  -O  ${WORK_DIR}/toy_read_ref_set.tar.gz -q
 tar -xf ${WORK_DIR}/toy_read_ref_set.tar.gz -C ${WORK_DIR}
 
 echo "  - Testing simpleaf set-paths"
@@ -53,7 +53,7 @@ else
 fi
 
 echo "  - Testing simpleaf index"
-REF_DIR="${WORK_DIR}/toy_ref_read/toy_human_ref"
+REF_DIR="${WORK_DIR}/toy_read_ref_set/toy_human_ref"
 index_cmd="ALEVIN_FRY_HOME=$ALEVIN_FRY_HOME \
 ${SIMPLEAF} index --ref-type spliced+intronic -f ${REF_DIR}/fasta/genome.fa \
 -g ${REF_DIR}/genes/genes.gtf \
@@ -69,7 +69,7 @@ else
 fi
 
 echo "  - Testing simpleaf quant"
-FASTQ_DIR="${WORK_DIR}/toy_ref_read/toy_read_fastq"
+FASTQ_DIR="${WORK_DIR}/toy_read_ref_set/toy_read_fastq"
 quant_cmd="ALEVIN_FRY_HOME=$ALEVIN_FRY_HOME \
 ${SIMPLEAF} quant \
 -1 ${FASTQ_DIR}/selected_R1_reads.fastq \
diff --git a/simpleaf_conda_env.yml b/simpleaf_conda_env.yml
index eaed75b..bbb84c1 100644
--- a/simpleaf_conda_env.yml
+++ b/simpleaf_conda_env.yml
@@ -6,7 +6,5 @@ channels:
   - bioconda
 
 dependencies:
-  - libboost>=1.85.0
-  - salmon>=1.10.3
-  - alevin-fry>=0.10.0
-  - piscem>=0.10.0
+  - alevin-fry>=0.12.0
+  - piscem>=0.17.1
diff --git a/src/main.rs b/src/main.rs
index e5bcbc8..911e11a 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -101,6 +101,11 @@ fn main() -> anyhow::Result<()> {
         // if we are running mapping and quantification
         Commands::Quant(map_quant_opts) => map_and_quant(af_home_path.as_path(), map_quant_opts),
 
+        // if we are running Flex GEX quantification
+        Commands::FlexQuant(flex_opts) => {
+            flex_quant::flex_map_and_quant(af_home_path.as_path(), flex_opts)
+        }
+
         // indexing for ATAC-seq data
         Commands::Atac(AtacCommand::Index(index_opts)) => {
             atac::index::piscem_index(af_home_path.as_path(), &index_opts)
diff --git a/src/simpleaf_commands.rs b/src/simpleaf_commands.rs
index b226f6d..8c43187 100644
--- a/src/simpleaf_commands.rs
+++ b/src/simpleaf_commands.rs
@@ -15,6 +15,8 @@ pub use self::indexing::build_ref_and_index;
 pub mod quant;
 pub use self::quant::map_and_quant;
 
+pub mod flex_quant;
+
 pub mod workflow;
 pub use self::workflow::{
     get_workflow, list_workflows, patch_manifest_or_template, refresh_protocol_estuary,
@@ -578,6 +580,85 @@ pub struct SetPathOpts {
     macs: Option<PathBuf>,
 }
 
+/// Options for the `flex-quant` subcommand — 10x Flex GEX quantification.
+///
+/// This command handles the complete Flex pipeline: probe index building,
+/// mapping, barcode correction (cell + sample), collation, and quantification.
+#[derive(Args, Clone, Debug)]
+#[command(arg_required_else_help = true)]
+pub struct FlexQuantOpts {
+    /// Chemistry name: 10x-flexv1-gex-3p or 10x-flexv2-gex-3p
+    #[arg(short, long)]
+    pub chemistry: String,
+
+    /// Target organism for automatic probe set selection
+    #[arg(long, value_enum)]
+    pub organism: crate::utils::chem_utils::Organism,
+
+    /// Path to output directory
+    #[arg(short, long)]
+    pub output: PathBuf,
+
+    /// Number of threads to use
+    #[arg(short, long, default_value_t = 16)]
+    pub threads: u32,
+
+    /// Path to pre-built probe index (overrides auto-build)
+    #[arg(short = 'i', long, help_heading = "Mapping Options")]
+    pub index: Option<PathBuf>,
+
+    /// Path to probe set CSV or FASTA (overrides auto-download).
+    /// If a CSV is provided, it is converted to FASTA and a t2g map
+    /// is generated automatically.
+    #[arg(long, help_heading = "Probe Set Options")]
+    pub probe_set: Option<PathBuf>,
+
+    /// Path to sample/probe barcode file with rotation mapping
+    /// (overrides auto-download). 3-column TSV: observed, canonical, sample_name.
+    #[arg(long, help_heading = "Probe Set Options")]
+    pub sample_bc_list: Option<PathBuf>,
+
+    /// Comma-separated list of R1 FASTQ files
+    #[arg(short = '1', long, value_delimiter = ',', help_heading = "Mapping Options")]
+    pub reads1: Vec<PathBuf>,
+
+    /// Comma-separated list of R2 FASTQ files
+    #[arg(short = '2', long, value_delimiter = ',', help_heading = "Mapping Options")]
+    pub reads2: Vec<PathBuf>,
+
+    /// UMI resolution mode
+    #[arg(short, long, default_value = "cr-like",
+        help_heading = "Quantification Options",
+        value_parser = clap::builder::PossibleValuesParser::new([
+            "cr-like", "cr-like-em", "parsimony", "parsimony-em",
+            "parsimony-gene", "parsimony-gene-em"
+        ]))]
+    pub resolution: String,
+
+    /// k-mer length for probe index building
+    #[arg(long, default_value_t = 23, help_heading = "Probe Set Options")]
+    pub kmer_length: usize,
+
+    /// The skipping strategy to use for k-mer collection
+    #[arg(long,
+        default_value = "permissive",
+        value_parser = clap::builder::PossibleValuesParser::new(["permissive", "strict"]),
+        help_heading = "Piscem Mapping Options")]
+    pub skipping_strategy: String,
+
+    /// If piscem >= 0.7.0, enable structural constraints
+    #[arg(long, help_heading = "Piscem Mapping Options")]
+    pub struct_constraints: bool,
+
+    /// Maximum cardinality equivalence class to examine
+    #[arg(long, default_value_t = DefaultParams::MAX_EC_CARD, help_heading = "Piscem Mapping Options")]
+    pub max_ec_card: u32,
+
+    /// Minimum read count threshold for unfiltered permit list
+    #[arg(long, default_value_t = 10, help_heading = "Permit List Options")]
+    pub min_reads: usize,
+}
+
 #[derive(Debug, Subcommand)]
 pub enum Commands {
     /// build the (expanded) reference index
@@ -589,6 +670,8 @@ pub enum Commands {
     Inspect {},
     /// quantify a sample
     Quant(MapQuantOpts),
+    /// quantify a 10x Flex GEX sample (probe-based, multiplexed)
+    FlexQuant(FlexQuantOpts),
     /// set paths to the programs that simpleaf will use
     SetPaths(SetPathOpts),
     /// refreshes version information associated with programs used by simpleaf
diff --git a/src/simpleaf_commands/chemistry.rs b/src/simpleaf_commands/chemistry.rs
index 91b7924..7fd4027 100644
--- a/src/simpleaf_commands/chemistry.rs
+++ b/src/simpleaf_commands/chemistry.rs
@@ -406,6 +406,8 @@ pub fn add_chemistry(
         remote_pl_url: add_opts.remote_url,
         version,
         meta,
+        sample_bc_list: None,
+        probe_sets: None,
     };
 
     let mut chem_hm = get_custom_chem_hm(&chem_p)?;
diff --git a/src/simpleaf_commands/flex_quant.rs b/src/simpleaf_commands/flex_quant.rs
new file mode 100644
index 0000000..ea39299
--- /dev/null
+++ b/src/simpleaf_commands/flex_quant.rs
@@ -0,0 +1,530 @@
+//! Pipeline orchestration for 10x Flex GEX quantification.
+//!
+//! Handles the complete Flex pipeline:
+//! 1. Resource resolution (probe index, cell BC whitelist, probe barcode file)
+//! 2. Mapping with piscem
+//! 3. Generate-permit-list (multi-barcode aware)
+//! 4. Collate (hierarchical, multi-barcode)
+//! 5. Quant
+
+use crate::core::{context, exec};
+use crate::simpleaf_commands::FlexQuantOpts;
+use crate::utils::chem_utils::{CustomChemistry, CustomChemistryMap};
+use crate::utils::constants::CHEMISTRIES_PATH;
+use crate::utils::prog_utils;
+
+use anyhow::{Context, bail};
+use serde_json::json;
+use std::io::{BufRead, BufReader, Write};
+use std::path::{Path, PathBuf};
+use std::time::Instant;
+use tracing::{info, warn};
+
+/// Convert a 10x probe set CSV file to a FASTA file suitable for indexing.
+///
+/// Also generates a transcript-to-gene (t2g) map and extracts probe set metadata.
+/// Returns (fasta_path, t2g_path, metadata_json).
+pub fn convert_probe_csv_to_fasta(
+    csv_path: &Path,
+    output_dir: &Path,
+) -> anyhow::Result<(PathBuf, PathBuf, serde_json::Value)> {
+    std::fs::create_dir_all(output_dir)?;
+
+    let file = std::fs::File::open(csv_path)
+        .with_context(|| format!("couldn't open probe CSV: {}", csv_path.display()))?;
+    let reader = BufReader::new(file);
+
+    let fasta_path = output_dir.join("probes.fa");
+    let t2g_path = output_dir.join("probe_t2g.tsv");
+    let meta_path = output_dir.join("probe_set_info.json");
+
+    let mut fasta_writer = std::io::BufWriter::new(std::fs::File::create(&fasta_path)?);
+    let mut t2g_writer = std::io::BufWriter::new(std::fs::File::create(&t2g_path)?);
+
+    let mut metadata = serde_json::Map::new();
+    let mut num_probes = 0u64;
+    let mut num_included = 0u64;
+    let mut num_excluded = 0u64;
+    let mut genes = std::collections::HashSet::new();
+    let mut header_parsed = false;
+
+    for line in reader.lines() {
+        let line = line?;
+        let trimmed = line.trim();
+
+        if let Some(stripped) = trimmed.strip_prefix('#') {
+            if let Some((key, val)) = stripped.split_once('=') {
+                metadata.insert(key.to_string(), serde_json::Value::String(val.to_string()));
+            }
+            continue;
+        }
+
+        if !header_parsed {
+            header_parsed = true;
+            continue;
+        }
+
+        let cols: Vec<&str> = trimmed.split(',').collect();
+        if cols.len() < 4 {
+            continue;
+        }
+        let gene_id = cols[0];
+        let probe_seq = cols[1];
+        let probe_id = cols[2];
+        let included = cols[3].eq_ignore_ascii_case("true");
+
+        num_probes += 1;
+        if included {
+            num_included += 1;
+        } else {
+            num_excluded += 1;
+        }
+        // All probes (included and excluded) go into the FASTA and t2g map.
+        // The index contains all probes, so quant needs a t2g entry for every
+        // reference. Excluded probes still map to their gene — they simply
+        // won't contribute meaningful counts in practice.
+        writeln!(fasta_writer, ">{}", probe_id)?;
+        writeln!(fasta_writer, "{}", probe_seq)?;
+        writeln!(t2g_writer, "{}\t{}", probe_id, gene_id)?;
+        genes.insert(gene_id.to_string());
+    }
+
+    fasta_writer.flush()?;
+    t2g_writer.flush()?;
+
+    metadata.insert("num_probes".to_string(), json!(num_probes));
+    metadata.insert("num_included".to_string(), json!(num_included));
+    metadata.insert("num_excluded".to_string(), json!(num_excluded));
+    metadata.insert("num_genes".to_string(), json!(genes.len()));
+    metadata.insert(
+        "source_file".to_string(),
+        json!(csv_path.file_name().unwrap_or_default().to_string_lossy()),
+    );
+
+    let meta_value = serde_json::Value::Object(metadata);
+    let meta_file = std::fs::File::create(&meta_path)?;
+    serde_json::to_writer_pretty(meta_file, &meta_value)?;
+
+    info!(
+        "Converted probe CSV: {} included probes, {} genes, {} excluded",
+        num_included,
+        genes.len(),
+        num_excluded,
+    );
+
+    Ok((fasta_path, t2g_path, meta_value))
+}
+
+/// Main entry point for the flex-quant pipeline.
+pub fn flex_map_and_quant(af_home: &Path, opts: FlexQuantOpts) -> anyhow::Result<()> {
+    let start = Instant::now();
+    info!("Starting Flex GEX pipeline");
+
+    // Load runtime context (program paths)
+    let rt = context::load_runtime_context(af_home)?;
+    let piscem_info = rt
+        .progs
+        .piscem
+        .as_ref()
+        .context("piscem is required for Flex mapping; please run `simpleaf set-paths`")?;
+    let alevin_fry_info = rt
+        .progs
+        .alevin_fry
+        .as_ref()
+        .context("alevin-fry is required; please run `simpleaf set-paths`")?;
+
+    // Load chemistry from registry
+    let chem_path = af_home.join(CHEMISTRIES_PATH);
+    if !chem_path.exists() {
+        bail!(
+            "Chemistry registry not found at {}. Run `simpleaf chemistry refresh` first.",
+            chem_path.display(),
+        );
+    }
+    let chem_file = std::fs::File::open(&chem_path)?;
+    let chem_map: CustomChemistryMap = serde_json::from_reader(chem_file)
+        .with_context(|| format!("couldn't parse {}", chem_path.display()))?;
+
+    let chem = chem_map
+        .get(&opts.chemistry)
+        .ok_or_else(|| {
+            anyhow::anyhow!(
+                "Chemistry '{}' not found in registry. Run `simpleaf chemistry refresh`.",
+                opts.chemistry,
+            )
+        })?;
+
+    if !chem.is_flex_gex() {
+        bail!(
+            "Chemistry '{}' is not a Flex GEX protocol. Use `simpleaf quant` for standard chemistries.",
+            opts.chemistry,
+        );
+    }
+
+    info!(
+        "Chemistry: {} (geometry: {}, organism: {})",
+        opts.chemistry,
+        chem.geometry(),
+        opts.organism,
+    );
+
+    // Create output directory structure
+    let output_dir = &opts.output;
+    std::fs::create_dir_all(output_dir)?;
+    let map_output = output_dir.join("af_map");
+    let quant_output = output_dir.join("af_quant");
+    std::fs::create_dir_all(&map_output)?;
+    std::fs::create_dir_all(&quant_output)?;
+
+    // === Step 1: Resolve probe index ===
+    let (index_path, t2g_path) = resolve_probe_index(
+        af_home, chem, &opts, &piscem_info.exe_path,
+    )?;
+
+    // === Step 2: Resolve cell barcode whitelist ===
+    // For Flex, the cell BC whitelist is fetched the same way as standard chemistries.
+    let cell_bc_path = resolve_cell_bc_whitelist(af_home, chem)?;
+
+    // === Step 3: Resolve probe barcode (sample BC) file ===
+    let sample_bc_path = resolve_sample_bc_list(af_home, chem, &opts)?;
+
+    // === Step 4: Map reads with piscem ===
+    info!("Mapping reads with piscem...");
+    let mut piscem_cmd = std::process::Command::new(&piscem_info.exe_path);
+    piscem_cmd
+        .arg("map-scrna")
+        .arg("-i").arg(&index_path)
+        .arg("-g").arg(chem.geometry())
+        .arg("-o").arg(&map_output)
+        .arg("-t").arg(format!("{}", opts.threads));
+
+    if opts.struct_constraints {
+        piscem_cmd.arg("--struct-constraints");
+    }
+    piscem_cmd
+        .arg("--skipping-strategy").arg(&opts.skipping_strategy)
+        .arg("--max-ec-card").arg(format!("{}", opts.max_ec_card));
+
+    let r1_str: Vec<String> = opts.reads1.iter().map(|p| p.display().to_string()).collect();
+    let r2_str: Vec<String> = opts.reads2.iter().map(|p| p.display().to_string()).collect();
+    piscem_cmd.arg("-1").arg(r1_str.join(","));
+    piscem_cmd.arg("-2").arg(r2_str.join(","));
+
+    let map_cmd_str = prog_utils::get_cmd_line_string(&piscem_cmd);
+    info!("piscem map-scrna cmd: {}", map_cmd_str);
+    let map_start = Instant::now();
+    exec::run_checked(&mut piscem_cmd, "[piscem map-sc]")?;
+    let map_duration = map_start.elapsed();
+    info!("Mapping complete in {:.1}s", map_duration.as_secs_f64());
+
+    // === Step 5: Generate permit list (multi-barcode) ===
+    info!("Generating permit list...");
+    let mut gpl_cmd = std::process::Command::new(&alevin_fry_info.exe_path);
+    gpl_cmd
+        .arg("generate-permit-list")
+        .arg("-i").arg(&map_output)
+        .arg("-d").arg(chem.expected_ori().as_str())
+        .arg("-o").arg(&quant_output)
+        .arg("-t").arg(format!("{}", opts.threads.min(8)))
+        .arg("--unfiltered-pl").arg(&cell_bc_path)
+        .arg("--sample-bc-list").arg(&sample_bc_path)
+        .arg("--sample-correction-mode").arg("exact")
+        .arg("--min-reads").arg(format!("{}", opts.min_reads));
+
+    let gpl_cmd_str = prog_utils::get_cmd_line_string(&gpl_cmd);
+    info!("generate-permit-list cmd: {}", gpl_cmd_str);
+    let gpl_start = Instant::now();
+    exec::run_checked(&mut gpl_cmd, "[generate permit list]")?;
+    let gpl_duration = gpl_start.elapsed();
+
+    // === Step 6: Collate ===
+    info!("Collating...");
+    let mut collate_cmd = std::process::Command::new(&alevin_fry_info.exe_path);
+    collate_cmd
+        .arg("collate")
+        .arg("-i").arg(&quant_output)
+        .arg("-r").arg(&map_output)
+        .arg("-t").arg(format!("{}", opts.threads));
+
+    let collate_cmd_str = prog_utils::get_cmd_line_string(&collate_cmd);
+    info!("collate cmd: {}", collate_cmd_str);
+    let collate_start = Instant::now();
+    exec::run_checked(&mut collate_cmd, "[collate]")?;
+    let collate_duration = collate_start.elapsed();
+
+    // === Step 7: Quantify ===
+    info!("Quantifying...");
+    let mut quant_cmd = std::process::Command::new(&alevin_fry_info.exe_path);
+    quant_cmd
+        .arg("quant")
+        .arg("-i").arg(&quant_output)
+        .arg("-o").arg(&quant_output)
+        .arg("-m").arg(&t2g_path)
+        .arg("-t").arg(format!("{}", opts.threads))
+        .arg("-r").arg(&opts.resolution)
+        .arg("--use-mtx");
+
+    let quant_cmd_str = prog_utils::get_cmd_line_string(&quant_cmd);
+    info!("quant cmd: {}", quant_cmd_str);
+    let quant_start = Instant::now();
+    exec::run_checked(&mut quant_cmd, "[quant]")?;
+    let quant_duration = quant_start.elapsed();
+
+    // === Write pipeline metadata ===
+    let meta = json!({
+        "chemistry": opts.chemistry,
+        "organism": opts.organism.to_string(),
+        "geometry": chem.geometry(),
+        "resolution": opts.resolution,
+        "threads": opts.threads,
+        "kmer_length": opts.kmer_length,
+        "index_path": index_path.display().to_string(),
+        "cell_bc_path": cell_bc_path.display().to_string(),
+        "sample_bc_path": sample_bc_path.display().to_string(),
+        "t2g_path": t2g_path.display().to_string(),
+        "map_cmd": map_cmd_str,
+        "gpl_cmd": gpl_cmd_str,
+        "collate_cmd": collate_cmd_str,
+        "quant_cmd": quant_cmd_str,
+        "map_duration_secs": map_duration.as_secs_f64(),
+        "gpl_duration_secs": gpl_duration.as_secs_f64(),
+        "collate_duration_secs": collate_duration.as_secs_f64(),
+        "quant_duration_secs": quant_duration.as_secs_f64(),
+        "total_duration_secs": start.elapsed().as_secs_f64(),
+        "simpleaf_version": env!("CARGO_PKG_VERSION"),
+    });
+    let meta_path = output_dir.join("simpleaf_flex_quant_info.json");
+    let meta_file = std::fs::File::create(&meta_path)?;
+    serde_json::to_writer_pretty(meta_file, &meta)?;
+
+    info!(
+        "Flex GEX pipeline complete in {:.1}s. Output: {}",
+        start.elapsed().as_secs_f64(),
+        output_dir.display(),
+    );
+
+    Ok(())
+}
+
+/// Resolve the probe index: use provided, build from probe set, or auto-download.
+fn resolve_probe_index(
+    af_home: &Path,
+    chem: &CustomChemistry,
+    opts: &FlexQuantOpts,
+    piscem_path: &Path,
+) -> anyhow::Result<(PathBuf, PathBuf)> {
+    // If user provided a pre-built index, use it directly.
+    if let Some(ref index) = opts.index {
+        info!("Using user-provided probe index: {}", index.display());
+        let t2g_candidate = index.join("probe_t2g.tsv");
+        let t2g = if t2g_candidate.exists() {
+            t2g_candidate
+        } else if let Some(ref ps) = opts.probe_set {
+            let conv_dir = opts.output.join("probe_conversion");
+            let (_, t2g, _) = convert_probe_csv_to_fasta(ps, &conv_dir)?;
+            t2g
+        } else {
+            bail!(
+                "When providing --index, a t2g map is also needed. \
+                 Place probe_t2g.tsv in the index directory, or provide --probe-set."
+            );
+        };
+        return Ok((index.clone(), t2g));
+    }
+
+    // If user provided a probe set file, build index from it.
+    if let Some(ref probe_set) = opts.probe_set {
+        warn!(
+            "Using user-provided probe set: {}. This overrides the default for '{}'.",
+            probe_set.display(),
+            opts.chemistry,
+        );
+        return build_index_from_probe_set(probe_set, opts, piscem_path);
+    }
+
+    // Auto mode: look up probe set in chemistry registry
+    let organism_key = opts.organism.to_string();
+    let probe_sets = chem.probe_sets.as_ref().ok_or_else(|| {
+        anyhow::anyhow!(
+            "Chemistry '{}' has no registered probe sets. Provide --probe-set.",
+            opts.chemistry,
+        )
+    })?;
+    let probe_info = probe_sets.get(&organism_key).ok_or_else(|| {
+        anyhow::anyhow!(
+            "No probe set for organism '{}' in chemistry '{}'. Provide --probe-set.",
+            organism_key,
+            opts.chemistry,
+        )
+    })?;
+
+    // Check cache
+    let cache_dir = af_home.join("probe_indices");
+    std::fs::create_dir_all(&cache_dir)?;
+    let cache_key = probe_info.plist_name.as_deref().unwrap_or("unknown");
+    let cached_index = cache_dir.join(format!("{}_{}", cache_key, opts.kmer_length));
+
+    if cached_index.join("index.ssi").exists() {
+        let t2g = cached_index.join("probe_t2g.tsv");
+        if t2g.exists() {
+            info!("Using cached probe index: {}", cached_index.display());
+            return Ok((cached_index.join("index"), t2g));
+        }
+    }
+
+    // Download and build
+    if let Some(ref url) = probe_info.remote_url {
+        info!("Downloading probe set '{}'...", probe_info.name);
+        let download_dir = cache_dir.join("downloads");
+        std::fs::create_dir_all(&download_dir)?;
+        let csv_path = download_dir.join(format!("{}.csv", probe_info.name));
+        if !csv_path.exists() {
+            prog_utils::download_to_file(url, &csv_path)?;
+            info!("Downloaded probe set to {}", csv_path.display());
+        }
+
+        // Build index in the cache directory
+        let mut build_opts = opts.clone();
+        build_opts.output = cached_index.clone();
+        let result = build_index_from_probe_set(&csv_path, &build_opts, piscem_path)?;
+        Ok((result.0, result.1))
+    } else {
+        bail!(
+            "No remote URL for probe set '{}'. Provide --probe-set.",
+            probe_info.name,
+        );
+    }
+}
+
+/// Build a probe index from a CSV or FASTA file.
+fn build_index_from_probe_set(
+    probe_set: &Path,
+    opts: &FlexQuantOpts,
+    piscem_path: &Path,
+) -> anyhow::Result<(PathBuf, PathBuf)> {
+    let index_dir = opts.output.join("probe_index");
+    std::fs::create_dir_all(&index_dir)?;
+
+    let ext = probe_set
+        .extension()
+        .and_then(|e| e.to_str())
+        .unwrap_or("");
+
+    let (fasta_path, t2g_path) = if ext.eq_ignore_ascii_case("csv") {
+        info!("Converting probe CSV to FASTA: {}", probe_set.display());
+        let (fa, t2g, _meta) = convert_probe_csv_to_fasta(probe_set, &index_dir)?;
+        (fa, t2g)
+    } else {
+        // Assume FASTA — generate identity t2g
+        let t2g = index_dir.join("probe_t2g.tsv");
+        if !t2g.exists() {
+            let fa_file = std::fs::File::open(probe_set)?;
+            let reader = BufReader::new(fa_file);
+            let mut t2g_writer = std::io::BufWriter::new(std::fs::File::create(&t2g)?);
+            for line in reader.lines() {
+                let line = line?;
+                if let Some(name) = line.strip_prefix('>') {
+                    let name = name.split_whitespace().next().unwrap_or(name);
+                    let gene = name.split('|').next().unwrap_or(name);
+                    writeln!(t2g_writer, "{}\t{}", name, gene)?;
+                }
+            }
+        }
+        (probe_set.to_path_buf(), t2g)
+    };
+
+    // Build piscem index
+    info!("Building probe index with k={}...", opts.kmer_length);
+    let index_prefix = index_dir.join("index");
+    let mut build_cmd = std::process::Command::new(piscem_path);
+    build_cmd
+        .arg("build")
+        .arg("-s").arg(&fasta_path)
+        .arg("-o").arg(&index_prefix)
+        .arg("-k").arg(format!("{}", opts.kmer_length))
+        .arg("-t").arg(format!("{}", opts.threads))
+        .arg("--overwrite");
+
+    info!("piscem build cmd: {}", prog_utils::get_cmd_line_string(&build_cmd));
+    exec::run_checked(&mut build_cmd, "[piscem build]")?;
+
+    // Copy t2g alongside index
+    let t2g_dest = index_dir.join("probe_t2g.tsv");
+    if t2g_path != t2g_dest && t2g_path.exists() {
+        std::fs::copy(&t2g_path, &t2g_dest)?;
+    }
+
+    Ok((index_prefix, t2g_dest))
+}
+
+/// Resolve cell barcode whitelist from the chemistry's plist_name/remote_url.
+fn resolve_cell_bc_whitelist(af_home: &Path, chem: &CustomChemistry) -> anyhow::Result<PathBuf> {
+    let plist_dir = af_home.join("plist");
+    std::fs::create_dir_all(&plist_dir)?;
+
+    if let Some(ref hash) = chem.plist_name {
+        let cached = plist_dir.join(hash);
+        if cached.exists() {
+            info!("Cell barcode whitelist cached: {}", cached.display());
+            return Ok(cached);
+        }
+    }
+
+    if let Some(ref url) = chem.remote_pl_url {
+        let dest = if let Some(ref hash) = chem.plist_name {
+            plist_dir.join(hash)
+        } else {
+            plist_dir.join("cell_bc_whitelist.txt")
+        };
+        info!("Downloading cell barcode whitelist...");
+        prog_utils::download_to_file(url, &dest)?;
+        info!("Downloaded to {}", dest.display());
+        Ok(dest)
+    } else {
+        bail!("Chemistry '{}' has no cell barcode whitelist URL.", chem.name());
+    }
+}
+
+/// Resolve probe barcode (sample BC) file: use provided or auto-fetch.
+fn resolve_sample_bc_list(
+    af_home: &Path,
+    chem: &CustomChemistry,
+    opts: &FlexQuantOpts,
+) -> anyhow::Result<PathBuf> {
+    if let Some(ref path) = opts.sample_bc_list {
+        info!("Using user-provided sample barcode list: {}", path.display());
+        return Ok(path.clone());
+    }
+
+    let sbc_info = chem.sample_bc_list.as_ref().ok_or_else(|| {
+        anyhow::anyhow!(
+            "Chemistry '{}' has no sample barcode list. Provide --sample-bc-list.",
+            opts.chemistry,
+        )
+    })?;
+
+    let plist_dir = af_home.join("plist");
+    std::fs::create_dir_all(&plist_dir)?;
+
+    if let Some(ref hash) = sbc_info.plist_name {
+        let cached = plist_dir.join(hash);
+        if cached.exists() {
+            info!("Sample barcode list cached: {}", cached.display());
+            return Ok(cached);
+        }
+    }
+
+    if let Some(ref url) = sbc_info.remote_url {
+        let dest = if let Some(ref hash) = sbc_info.plist_name {
+            plist_dir.join(hash)
+        } else {
+            plist_dir.join("sample_bc_list.txt")
+        };
+        info!("Downloading sample barcode list...");
+        prog_utils::download_to_file(url, &dest)?;
+        info!("Downloaded to {}", dest.display());
+        Ok(dest)
+    } else {
+        bail!("Chemistry '{}' has no sample barcode list URL. Provide --sample-bc-list.", opts.chemistry);
+    }
+}
diff --git a/src/utils/af_utils.rs b/src/utils/af_utils.rs
index e4fae0a..33826a1 100644
--- a/src/utils/af_utils.rs
+++ b/src/utils/af_utils.rs
@@ -183,7 +183,7 @@ impl CellFilterMethod {
 pub enum Chemistry {
     Rna(RnaChemistry),
     Atac(AtacChemistry),
-    Custom(CustomChemistry),
+    Custom(Box<CustomChemistry>),
 }
 
 impl QueryInRegistry for Chemistry {
@@ -312,7 +312,7 @@ impl Chemistry {
                         s,
                         chem.geometry()
                     );
-                    Chemistry::Custom(chem)
+                    Chemistry::Custom(Box::new(chem))
                 } else {
                     // we want to bail with an error if the chemistry is *known* but
                     // not supported using this mapper (i.e. if it is a piscem-specific chem
@@ -325,12 +325,14 @@ impl Chemistry {
                             index_type.counterpart().as_str()
                         );
                     }
-                    Chemistry::Custom(CustomChemistry::simple_custom(s).with_context(|| {
-                        format!(
-                            "Could not parse the provided chemistry {}. Please ensure it is a valid chemistry string wrapped by quotes or that it is defined in the custom_chemistries.json file.",
-                            s
-                        )
-                    })?)
+                    Chemistry::Custom(Box::new(
+                        CustomChemistry::simple_custom(s).with_context(|| {
+                            format!(
+                                "Could not parse the provided chemistry {}. Please ensure it is a valid chemistry string wrapped by quotes or that it is defined in the custom_chemistries.json file.",
+                                s
+                            )
+                        })?,
+                    ))
                 }
             }
         };
@@ -417,6 +419,27 @@ fn is_builtin(s: &str) -> Option<&str> {
     }
 }
 
+/// Returns true if the geometry string contains piscem-extended tags
+/// that seq_geom_parser doesn't understand: `s[N]` (sample barcode)
+/// or numbered barcodes like `b0[N]`, `b1[N]`.
+fn has_piscem_extended_tags(geo: &str) -> bool {
+    // Match s[<digits>] — sample barcode tag
+    // Match b<digit>[<digits>] — numbered barcode tag (b0[16], b1[8], etc.)
+    let bytes = geo.as_bytes();
+    for i in 0..bytes.len() {
+        if bytes[i] == b's' && bytes.get(i + 1) == Some(&b'[') {
+            return true;
+        }
+        if bytes[i] == b'b'
+            && bytes.get(i + 1).is_some_and(|c| c.is_ascii_digit())
+            && bytes.get(i + 2) == Some(&b'[')
+        {
+            return true;
+        }
+    }
+    false
+}
+
 /// determines if a given geometry string is valid; if so
 /// it returns `Ok(())`, otherwise it returns an `anyhow::Error` describing
 /// why parsing failed.
@@ -429,6 +452,15 @@ pub fn validate_geometry(geo: &str) -> Result<()> {
             builtin_kwd
         );
         Ok(()) //bail!("The provided geometry is a builtin keyword [{}] (preceeded by \"__\") and so no attempt was made to parse it", builtin_kwd);
+    } else if has_piscem_extended_tags(geo) {
+        // Geometries with piscem-only extensions (e.g. s[N] for sample
+        // barcodes, bN[L] for numbered barcodes) cannot be parsed by
+        // seq_geom_parser. These are validated by piscem at mapping time.
+        debug!(
+            "geometry string contains piscem-extended tags (s[]/b<N>[]), skipping seq_geom_parser validation: {}",
+            geo
+        );
+        Ok(())
     } else {
         let fg = FragmentGeomDesc::try_from(geo);
         match fg {
diff --git a/src/utils/chem_utils.rs b/src/utils/chem_utils.rs
index ef6790b..82c1505 100644
--- a/src/utils/chem_utils.rs
+++ b/src/utils/chem_utils.rs
@@ -75,6 +75,86 @@ impl ExpectedOri {
     }
 }
 
+/// Target organism for probe set selection in Flex protocols.
+#[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq)]
+pub enum Organism {
+    #[serde(rename = "human")]
+    Human,
+    #[serde(rename = "mouse")]
+    Mouse,
+    #[serde(untagged)]
+    Other(String),
+}
+
+impl std::str::FromStr for Organism {
+    type Err = std::convert::Infallible;
+    fn from_str(s: &str) -> Result<Self, Self::Err> {
+        Ok(match s.to_lowercase().as_str() {
+            "human" => Organism::Human,
+            "mouse" => Organism::Mouse,
+            other => Organism::Other(other.to_string()),
+        })
+    }
+}
+
+impl fmt::Display for Organism {
+    fn fmt(&self, f: &mut fmt::Formatter) -> fmt::Result {
+        match self {
+            Organism::Human => write!(f, "human"),
+            Organism::Mouse => write!(f, "mouse"),
+            Organism::Other(s) => write!(f, "{}", s),
+        }
+    }
+}
+
+impl clap::ValueEnum for Organism {
+    fn value_variants<'a>() -> &'a [Self] {
+        &[Organism::Human, Organism::Mouse]
+    }
+
+    fn to_possible_value(&self) -> Option<clap::builder::PossibleValue> {
+        match self {
+            Organism::Human => Some(clap::builder::PossibleValue::new("human")),
+            Organism::Mouse => Some(clap::builder::PossibleValue::new("mouse")),
+            Organism::Other(_) => None,
+        }
+    }
+}
+
+/// Protocol type — distinguishes standard scRNA from Flex, ATAC, etc.
+#[derive(Serialize, Deserialize, Debug, Clone, PartialEq, Eq, Default)]
+pub enum ProtocolType {
+    /// Standard single-cell RNA-seq (10x Chromium, etc.)
+    #[serde(rename = "standard_rna")]
+    #[default]
+    StandardRna,
+    /// 10x Flex gene expression (probe-based, multi-barcode)
+    #[serde(rename = "flex_gex")]
+    FlexGex,
+    /// scATAC-seq
+    #[serde(rename = "atac")]
+    Atac,
+}
+
+/// Info for fetching the probe/sample barcode list (for Flex protocols).
+#[derive(Serialize, Deserialize, Debug, Clone, PartialEq)]
+pub struct SampleBcListInfo {
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub plist_name: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub remote_url: Option<String>,
+}
+
+/// Info for a specific probe set (organism-specific, for Flex protocols).
+#[derive(Serialize, Deserialize, Debug, Clone, PartialEq)]
+pub struct ProbeSetInfo {
+    pub name: String,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub plist_name: Option<String>,
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub remote_url: Option<String>,
+}
+
 /// A CustomChemistry is a description of a chemistry that is not
 /// covered under the different built-in chemistries.  It defines the
 /// relevant information about how a chemistry should be defined including
@@ -90,10 +170,16 @@ pub struct CustomChemistry {
     pub version: String,
     #[serde(skip_serializing_if = "Option::is_none")]
     pub plist_name: Option<String>,
-    #[serde(skip_serializing_if = "Option::is_none")]
+    #[serde(skip_serializing_if = "Option::is_none", rename = "remote_url")]
     pub remote_pl_url: Option<String>,
     #[serde(skip_serializing_if = "Option::is_none")]
     pub meta: Option<Value>,
+    /// Probe/sample barcode list info (for Flex protocols)
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub sample_bc_list: Option<SampleBcListInfo>,
+    /// Probe sets keyed by organism (for Flex protocols)
+    #[serde(skip_serializing_if = "Option::is_none")]
+    pub probe_sets: Option<HashMap<String, ProbeSetInfo>>,
 }
 
 /// The key to use to query a custom chemistry
@@ -115,6 +201,8 @@ impl CustomChemistry {
             plist_name: None,
             remote_pl_url: None,
             meta: None,
+            sample_bc_list: None,
+            probe_sets: None,
         })
     }
     pub fn geometry(&self) -> &str {
@@ -148,6 +236,20 @@ impl CustomChemistry {
     pub fn meta(&self) -> &Option<Value> {
         &self.meta
     }
+
+    /// Get the protocol type from meta.protocol_type, defaulting to StandardRna.
+    pub fn protocol_type(&self) -> ProtocolType {
+        self.meta
+            .as_ref()
+            .and_then(|m| m.get("protocol_type"))
+            .and_then(|v| serde_json::from_value::<ProtocolType>(v.clone()).ok())
+            .unwrap_or_default()
+    }
+
+    /// Whether this chemistry is a Flex GEX protocol.
+    pub fn is_flex_gex(&self) -> bool {
+        self.protocol_type() == ProtocolType::FlexGex
+    }
 }
 
 impl fmt::Display for CustomChemistry {
diff --git a/src/utils/jrsonnet_main.rs b/src/utils/jrsonnet_main.rs
index 81d70e3..ea44746 100644
--- a/src/utils/jrsonnet_main.rs
+++ b/src/utils/jrsonnet_main.rs
@@ -192,9 +192,8 @@ impl From<ErrorKind> for Error {
 }
 
 fn main_catch(opts: Opts) -> anyhow::Result<String> {
-    let s = State::default();
     let trace = opts.trace.trace_format();
-    let eval_result = main_real(&s, opts);
+    let eval_result = main_real(opts);
     match eval_result {
         Ok(js) => Ok(js),
         Err(e) => {
@@ -211,18 +210,20 @@ fn main_catch(opts: Opts) -> anyhow::Result<String> {
     }
 }
 
-fn main_real(s: &State, opts: Opts) -> Result<String, Error> {
+fn main_real(opts: Opts) -> Result<String, Error> {
     let _gc_leak_guard = opts.gc.leak_on_exit();
     let _gc_print_stats = opts.gc.stats_printer();
     let _stack_depth_override = opts.misc.stack_size_override();
 
     let import_resolver = opts.misc.import_resolver();
-    s.set_import_resolver(import_resolver);
+    let mut state_builder = State::builder();
+    state_builder.import_resolver(import_resolver);
 
-    let std = opts.std.context_initializer(s)?;
+    let std = opts.std.context_initializer()?;
     if let Some(std) = std {
-        s.set_context_initializer(std);
+        state_builder.context_initializer(std);
     }
+    let s = state_builder.build();
 
     let input = opts.input.input.ok_or(Error::MissingInputArgument)?;
     let val = s.import(input)?;
diff --git a/tests/snapshots/cli-help/simpleaf___help.txt b/tests/snapshots/cli-help/simpleaf___help.txt
index d722166..dd32aa8 100644
--- a/tests/snapshots/cli-help/simpleaf___help.txt
+++ b/tests/snapshots/cli-help/simpleaf___help.txt
@@ -7,6 +7,7 @@ Commands:
   chemistry          operate on or inspect the chemistry registry
   inspect            inspect the current configuration
   quant              quantify a sample
+  flex-quant         quantify a 10x Flex GEX sample (probe-based, multiplexed)
   set-paths          set paths to the programs that simpleaf will use
   refresh-prog-info  refreshes version information associated with programs used by simpleaf
   atac               run a sub-command dealing with atac-seq data