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Merge pull request #108 from kavonrtep/galaxy-re
front page updated - workshop
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files/galaxy/static/welcome.html

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</style>
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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<p><link rel="stylesheet" href="style/base.css" type="text/css" /></p>
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<p><img src="images/umbr_programs_icons/RE_header.png" alt="Welcome to RepeatExplorer" width="700px"/></p>
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<!--<p style="color:red"><b>Dear users, the current Galaxy interface is out of date, and the software configuration is behind the point of reparation. That's why we decided to create a new version from scratch using the latest Galaxy interface accompanied by a new scheduling server with better computational resources. Currently, the new platform is accessible at URL https://repeatexplorer-elixir.cerit-sc.cz/galaxy/ via your valid accounts. The old platform will be accessible at https://galaxyelixir.vm.cesnet.cz/galaxy/ for 6 more months, so you have access to your data. You can use the old platform as you used to, including submitting new jobs, until June 9 (including). After this period, consider the old platform to be a read-only system til the end of its existence (30.11.2024). Your RepeatExplorer admin team</b></p>-->
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<!--<p style="color:blue"><b>Dear users, the new Galaxy setup faces troubles with data transfer from computing nodes back to Galaxy frontend. It relates mainly to jobs resulting in big output files (RepeatExplorer2 clustering, TAREAN, etc.). We are working on it; however, the process is slow because it needs to be tested on the running server with the real load. Sorry for your inconvenience. We will keep you updated here. Your RepeatExplorer admin team</b></p>-->
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<!--<p style="color:blue"><b>Dear users. There had been troubles with data transfer from computing nodes back to the Galaxy server, and some jobs had to be canceled because they did not fail by themselves. However, most of them might be actually finished and data could be waiting on a compute node. Therefore, if you have a job created before Jul 10 and recently canceled (Error looks like "Remote job server indicated a problem running or monitoring this job." or "Job output deleted by user before job completed."), report the failed job using a standard error reporting (bug-like button) and write into the message the following: "Please check the results for this job". If the results will still be available, we will send them to your preferred email directly as a download link. We are sorry for your inconvenience. Your RepeatExplorer admin team</b></p>-->
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<p><img src="images/umbr_programs_icons/RE_header.png"
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alt="Welcome to RepeatExplorer"
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width="700px"/></p>
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<p>Developed and maintained by the <a href="http://w3lamc.umbr.cas.cz/lamc/">Laboratory of Molecular Cytogenetics</a>, Institute of Plant Molecular Biology, Biology Centre CAS, Ceske Budejovice, Czech Republic</p>
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<p>This RepeatExplorer Galaxy portal is a part of services provided by <a href="https://www.elixir-czech.cz/">ELIXIR</a> (European Research Infrastructure for Biological Information). Please acknowledge this fact in your publications by adding a statement: <em>“Computational resources for RepeatExplorer analysis were provided by the ELIXIR-CZ project (LM2023055), part of the international ELIXIR infrastructure.”</em></p>
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<div class="frame">
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<p><a href="http://www.elixir-czech.cz" target="_blank"> <span class="helper"></span> <img align="middle" src="images/umbr_programs_icons/ELIXIR_CZECHREPUBLIC_white_background_small.png" alt="ELIXIR"/> </a></p>
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</div>
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<hr />
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<h2 id="th-repeat-explorer-workshop-may-2729-2025">12th Repeat Explorer Workshop, May 27–29, 2025</h2>
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<p>Join us at the 12th Repeat Explorer Workshop, May 27–29, 2025, in České Budějovice, Czech Republic. The workshop will focus on “Repetitive DNA Annotation in Genome Assemblies” and will include theoretical sessions, hands-on training, and a mini-conference for presenting research on repeat analysis in plant and animal genomes. For more detailed information, please visit our workshop page: <a href="http://repeatexplorer.org/?page_id=14">Workshop Details.</a></p>
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<h2 id="contact-information">Contact information</h2>
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<p>If you need help, need to increase a data quota, or want to report a problem, please contact <a href="mailto:[email protected]">server administrator</a>. If you encounter an error while running a tool, please report a bug using the bug icon in the dataset history.</p>
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