fix(hooks): add comprehensive cruft skip patterns for binary files #91

Workflow file for this run

	# CI/CD Pipeline with LLM Governance Integration
	# Comprehensive code quality, security, and LLM debt detection
	#
	# Features:
	# - Standard quality checks (tests, linting, type checking)
	# - SonarQube quality gate enforcement
	# - LLM anti-pattern detection
	# - Assumption tag verification
	# - Security scanning
	#
	# Three-Layer Governance:
	# Layer 1: Production Runtime Risks (RAD tags)
	# Layer 2: LLM Development Debt (LLM tags)
	# Layer 3: Automated Code Quality (SonarQube)

	name: CI

	on:
	push:
	branches: [main, master, develop]
	pull_request:
	types: [opened, synchronize, reopened]
	branches: [main, master, develop]
	workflow_dispatch:

	permissions:
	contents: read
	pull-requests: write
	checks: write

	env:
	PYTHON_VERSION: '3.12'

	jobs:
	# ============================================================================
	# Job 1: Standard Quality Checks
	# ============================================================================
	quality-checks:
	name: Code Quality Checks
	runs-on: ubuntu-latest
	timeout-minutes: 10

	steps:
	- name: Checkout code
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
	with:
	fetch-depth: 0

	- name: Install uv
	uses: astral-sh/setup-uv@d4b2f3b6ecc6e67c4457f6d3e41ec42d3d0fcb86 # v5.2.1
	with:
	enable-cache: true

	- name: Set up Python
	uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
	with:
	python-version: ${{ env.PYTHON_VERSION }}

	- name: Install dependencies
	run: \|
	uv sync --all-extras
	pip install cookiecutter pre-commit yamllint tomli ruff basedpyright black bandit safety interrogate codespell

	- name: Install Node.js tools
	run: \|
	npm install -g markdownlint-cli

	- name: Run Black formatter check
	run: \|
	echo "::group::Black Formatting"
	black --check --diff hooks/ \|\| {
	echo "::error::Code formatting issues detected. Run 'black hooks/' to fix."
	exit 1
	}
	echo "::endgroup::"

	- name: Run Ruff linter
	run: \|
	echo "::group::Ruff Linting"
	ruff check hooks/ --output-format=github
	echo "::endgroup::"

	- name: Run MyPy type checker
	run: \|
	echo "::group::MyPy Type Checking"
	mypy hooks/ --ignore-missing-imports --no-error-summary \|\| {
	echo "::warning::Type checking found issues"
	}
	echo "::endgroup::"

	- name: Run tests with coverage
	run: \|
	echo "::group::Test Execution"
	if [ -d "tests" ]; then
	uv run pytest \
	--cov=hooks \
	--cov-report=xml:coverage.xml \
	--cov-report=term-missing \
	--cov-report=html \
	--cov-branch \
	--cov-fail-under=80 \
	-v
	else
	echo "::warning::No tests directory found"
	echo '<?xml version="1.0" ?><coverage version="1.0"></coverage>' > coverage.xml
	fi
	echo "::endgroup::"

	- name: Security scan with Bandit
	run: \|
	echo "::group::Bandit Security Scan"
	bandit -r hooks/ -f json -o bandit-report.json \|\| {
	echo "::warning::Security issues detected"
	cat bandit-report.json
	}
	echo "::endgroup::"

	- name: Dependency vulnerability scan
	run: \|
	echo "::group::Safety Dependency Scan"
	pip freeze \| safety check --stdin \|\| {
	echo "::warning::Vulnerable dependencies detected"
	}
	echo "::endgroup::"

	- name: Upload coverage
	uses: actions/upload-artifact@6f51ac03b9356f520e9adb1b1b7802705f340c2b # v4.5.0
	with:
	name: coverage-reports
	path: \|
	coverage.xml
	htmlcov/
	retention-days: 7

	# ============================================================================
	# Job 2: LLM Governance Checks
	# ============================================================================
	llm-governance:
	name: LLM Governance & Assumption Verification
	runs-on: ubuntu-latest
	timeout-minutes: 15
	outputs:
	rad_tags: ${{ steps.check-tags.outputs.rad_tags }}
	llm_tags: ${{ steps.check-tags.outputs.llm_tags }}
	total_tags: ${{ steps.check-tags.outputs.total_tags }}

	steps:
	- name: Checkout code
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
	with:
	fetch-depth: 0

	- name: Set up Python
	uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
	with:
	python-version: ${{ env.PYTHON_VERSION }}

	- name: Check for unverified assumption tags
	id: check-tags
	run: \|
	echo "::group::Scanning for Unverified Assumption Tags"

	# Check for RAD tags (Layer 1: Production Runtime Risks)
	CRITICAL_TAGS=$(grep -r "#CRITICAL" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	ASSUME_TAGS=$(grep -r "#ASSUME" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	EDGE_TAGS=$(grep -r "#EDGE" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")

	# Check for LLM debt tags (Layer 2: LLM Development Debt)
	LLM_MOCK=$(grep -r "#LLM-MOCK" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	LLM_PLACEHOLDER=$(grep -r "#LLM-PLACEHOLDER" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	LLM_LOGIC=$(grep -r "#LLM-LOGIC" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	LLM_SCAFFOLD=$(grep -r "#LLM-SCAFFOLD" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	LLM_INFERRED=$(grep -r "#LLM-INFERRED" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")
	LLM_TEST_FIRST=$(grep -r "#LLM-TEST-FIRST" --include="*.py" hooks/ 2>/dev/null \| wc -l \|\| echo "0")

	TOTAL_RAD=$((CRITICAL_TAGS + ASSUME_TAGS))
	TOTAL_LLM=$((LLM_MOCK + LLM_PLACEHOLDER + LLM_LOGIC + LLM_SCAFFOLD + LLM_INFERRED + LLM_TEST_FIRST))
	TOTAL_TAGS=$((TOTAL_RAD + TOTAL_LLM))

	echo "rad_tags=$TOTAL_RAD" >> $GITHUB_OUTPUT
	echo "llm_tags=$TOTAL_LLM" >> $GITHUB_OUTPUT
	echo "total_tags=$TOTAL_TAGS" >> $GITHUB_OUTPUT

	echo "### Assumption Tag Summary" >> $GITHUB_STEP_SUMMARY
	echo "" >> $GITHUB_STEP_SUMMARY
	echo "Layer 1 (Production Runtime Risks):" >> $GITHUB_STEP_SUMMARY
	echo "- #CRITICAL tags: $CRITICAL_TAGS" >> $GITHUB_STEP_SUMMARY
	echo "- #ASSUME tags: $ASSUME_TAGS" >> $GITHUB_STEP_SUMMARY
	echo "- #EDGE tags: $EDGE_TAGS" >> $GITHUB_STEP_SUMMARY
	echo "" >> $GITHUB_STEP_SUMMARY
	echo "Layer 2 (LLM Development Debt):" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-MOCK: $LLM_MOCK" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-PLACEHOLDER: $LLM_PLACEHOLDER" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-LOGIC: $LLM_LOGIC" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-SCAFFOLD: $LLM_SCAFFOLD" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-INFERRED: $LLM_INFERRED" >> $GITHUB_STEP_SUMMARY
	echo "- #LLM-TEST-FIRST: $LLM_TEST_FIRST" >> $GITHUB_STEP_SUMMARY
	echo "" >> $GITHUB_STEP_SUMMARY
	echo "Total unverified tags: $TOTAL_TAGS" >> $GITHUB_STEP_SUMMARY

	if [ "$TOTAL_RAD" -gt 0 ]; then
	echo "::error::Found $TOTAL_RAD unverified production risk tags (#CRITICAL, #ASSUME)"
	fi

	if [ "$TOTAL_LLM" -gt 0 ]; then
	echo "::warning::Found $TOTAL_LLM unverified LLM debt tags"
	fi

	echo "::endgroup::"

	- name: Block PR if critical tags found
	if: steps.check-tags.outputs.rad_tags > 0
	run: \|
	echo "::error::❌ PR blocked: Found ${{ steps.check-tags.outputs.rad_tags }} unverified production risk tags"
	echo ""
	echo "Please verify and remove these tags before merging:"
	grep -rn "#CRITICAL\\|#ASSUME" --include="*.py" hooks/ \|\| true
	echo ""
	echo "See CLAUDE.md for verification workflow"
	exit 1

	- name: Detect LLM anti-patterns
	run: \|
	echo "::group::LLM Anti-Pattern Detection"

	# Hardcoded localhost/URLs
	echo "Checking for hardcoded localhost/URLs..."
	if grep -rE "(localhost\|127\.0\.0\.1\|http://\|https://)" --include="*.py" hooks/ \| \
	grep -v "#LLM-PLACEHOLDER" \| grep -v "^[[:space:]]*#"; then
	echo "::warning::Found hardcoded URLs without #LLM-PLACEHOLDER tag"
	fi

	# Hardcoded secrets patterns
	echo "Checking for potential hardcoded secrets..."
	if grep -rE "(api_key\|password\|secret\|token)\s=\s[\"'][^\"']+[\"']" --include="*.py" hooks/ \| \
	grep -v "#LLM-PLACEHOLDER" \| grep -v "^[[:space:]]*#"; then
	echo "::error::Potential hardcoded secret detected"
	exit 1
	fi

	# Magic numbers
	echo "Checking for magic numbers..."
	MAGIC_NUMBERS=$(grep -rE "\b[0-9]{2,}\b" --include="*.py" hooks/ \| \
	grep -v "#LLM-PLACEHOLDER" \| \
	grep -v "^[[:space:]]*#" \| \
	wc -l \|\| echo "0")

	if [ "$MAGIC_NUMBERS" -gt 10 ]; then
	echo "::warning::Found $MAGIC_NUMBERS potential magic numbers without constants"
	fi

	echo "::endgroup::"

	# ============================================================================
	# Job 3: SonarQube Quality Gate (Enhanced with LLM Governance)
	# ============================================================================
	sonarqube-quality-gate:
	name: SonarQube Quality Gate
	runs-on: ubuntu-latest
	needs: [quality-checks, llm-governance]
	timeout-minutes: 15

	steps:
	- name: Checkout code
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
	with:
	fetch-depth: 0

	- name: Download coverage reports
	uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
	with:
	name: coverage-reports

	- name: SonarCloud Scan
	uses: SonarSource/sonarcloud-github-action@master
	continue-on-error: true
	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}

	- name: Wait for Quality Gate
	uses: sonarsource/sonarqube-quality-gate-action@master
	continue-on-error: true
	timeout-minutes: 5
	env:
	SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
	id: quality-gate

	- name: Quality Gate Result
	run: \|
	echo "::group::Quality Gate Status"
	echo "Quality Gate Status: ${{ steps.quality-gate.outputs.quality-gate-status }}"
	echo "View detailed results: https://sonarcloud.io/project/overview?id=williaby_cookiecutter-python-template"
	echo "::endgroup::"

	- name: Quality Gate Status (Non-Blocking)
	if: steps.quality-gate.outputs.quality-gate-status == 'FAILED'
	run: \|
	echo "::warning::⚠️ Quality Gate FAILED (non-blocking for template repo)"
	echo ""
	echo "SonarQube quality gate did not pass. Consider reviewing:"
	echo "- Review issues at: https://sonarcloud.io/project/overview?id=williaby_cookiecutter-python-template"
	echo "- Note: Duplicate code warnings are expected in cookiecutter templates"
	echo "- SonarCloud analysis primarily for main branch monitoring"

	- name: Generate unified governance report
	if: always()
	run: \|
	cat >> $GITHUB_STEP_SUMMARY << 'EOF'
	## 🎯 Three-Layer Governance Report

	### Layer 1: Production Runtime Risks (RAD)
	- #CRITICAL tags: ${{ needs.llm-governance.outputs.rad_tags > 0 && '❌ FOUND' \|\| '✅ None' }}
	- Status: ${{ needs.llm-governance.outputs.rad_tags > 0 && 'BLOCKED' \|\| 'PASSED' }}

	### Layer 2: LLM Development Debt
	- LLM debt tags: ${{ needs.llm-governance.outputs.llm_tags > 0 && '⚠️ FOUND' \|\| '✅ None' }}
	- Status: ${{ needs.llm-governance.outputs.llm_tags > 0 && 'WARNING' \|\| 'PASSED' }}

	### Layer 3: Automated Code Quality (SonarQube)
	- Quality Gate: ${{ steps.quality-gate.outputs.quality-gate-status \|\| 'N/A' }}
	- Status: ${{ steps.quality-gate.outputs.quality-gate-status == 'PASSED' && 'PASSED' \|\| 'INFORMATIONAL (non-blocking)' }}

	### Overall Status
	${{ needs.llm-governance.outputs.rad_tags > 0 && '❌ PR BLOCKED - Fix RAD tags before merging' \|\| '✅ READY TO MERGE' }}

	---

	Next Steps:
	- Fix all CRITICAL issues
	- Verify and remove assumption tags
	- Ensure quality gate passes
	- Review SonarQube findings
	EOF

	# ============================================================================
	# Job 4: Template Validation
	# ============================================================================
	validate-template:
	name: Validate Cookiecutter Template
	runs-on: ubuntu-latest
	timeout-minutes: 10

	steps:
	- name: Checkout code
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

	- name: Set up Python
	uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
	with:
	python-version: ${{ env.PYTHON_VERSION }}

	- name: Install cookiecutter
	run: \|
	pip install cookiecutter

	- name: Generate test project
	run: \|
	echo "::group::Template Generation Test"
	cd /tmp
	cookiecutter --no-input /home/runner/work/cookiecutter-python-template/cookiecutter-python-template
	echo "✓ Template generated successfully"
	ls -la my_python_project/
	echo "::endgroup::"

	- name: Validate generated project structure
	run: \|
	echo "::group::Structure Validation"
	cd /tmp/my_python_project

	# Check key files exist
	test -f README.md \|\| { echo "::error::README.md missing"; exit 1; }
	test -f pyproject.toml \|\| { echo "::error::pyproject.toml missing"; exit 1; }
	test -f CLAUDE.md \|\| { echo "::error::CLAUDE.md missing"; exit 1; }
	test -d src \|\| { echo "::error::src/ directory missing"; exit 1; }
	test -d tests \|\| { echo "::error::tests/ directory missing"; exit 1; }

	echo "✓ All key files and directories present"
	echo "::endgroup::"

	- name: Check for LLM governance in generated project
	run: \|
	echo "::group::LLM Governance Validation"
	cd /tmp/my_python_project

	# Check if CLAUDE.md exists
	if [ ! -f CLAUDE.md ]; then
	echo "::error::CLAUDE.md missing from generated project"
	exit 1
	fi

	echo "✓ CLAUDE.md exists in generated project"

	# Optional: Check if LLM governance is documented (don't fail if missing)
	if grep -q "#LLM-MOCK\\|#LLM-PLACEHOLDER\\|#CRITICAL" CLAUDE.md 2>/dev/null; then
	echo "✓ LLM governance tags found in documentation"
	else
	echo "ℹ LLM governance tags documentation is optional"
	fi

	echo "::endgroup::"

	# ============================================================================
	# Summary Job
	# ============================================================================
	ci-summary:
	name: CI Summary
	runs-on: ubuntu-latest
	needs: [quality-checks, llm-governance, sonarqube-quality-gate, validate-template]
	if: always()

	steps:
	- name: Generate final summary
	run: \|
	echo "### 🚀 CI Pipeline Complete" >> $GITHUB_STEP_SUMMARY
	echo "" >> $GITHUB_STEP_SUMMARY
	echo "All governance layers checked:" >> $GITHUB_STEP_SUMMARY
	echo "- ✅ Code Quality Checks" >> $GITHUB_STEP_SUMMARY
	echo "- ✅ LLM Governance Validation" >> $GITHUB_STEP_SUMMARY
	echo "- ✅ SonarQube Quality Gate" >> $GITHUB_STEP_SUMMARY
	echo "- ✅ Template Validation" >> $GITHUB_STEP_SUMMARY
	echo "" >> $GITHUB_STEP_SUMMARY
	echo "Status: ${{ job.status }}" >> $GITHUB_STEP_SUMMARY

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fix(hooks): add comprehensive cruft skip patterns for binary files #91

Workflow file

fix(hooks): add comprehensive cruft skip patterns for binary files #91

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Workflow file for this run