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Update registration and bet section
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README.md

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@@ -138,7 +138,15 @@ We provide a (WIP) documentation. Have a look [here](https://brainles-preprocess
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Please credit the authors by citing their work.
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### Registration
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We currently provide support for [ANTs](https://github.com/ANTsX/ANTs) (default), [Niftyreg](https://github.com/KCL-BMEIS/niftyreg) (Linux). We also offer basic support for [greedy](https://greedy.readthedocs.io/en/latest/reference.html#greedy-usage) and [elastix](https://pypi.org/project/itk-elastix/0.13.0/).
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We currently fully support:
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- [ANTs](https://github.com/ANTsX/ANTs) (default)
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- [Niftyreg](https://github.com/KCL-BMEIS/niftyreg) (Linux)
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We also offer basic support for:
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- [greedy](https://greedy.readthedocs.io/en/latest/reference.html#greedy-usage) (Optional dependency, install via: `pip install brainles_preprocessing[picsl_greedy]`)
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- [elastix](https://pypi.org/project/itk-elastix/0.13.0/) (Optional dependency, install via: `pip install brainles_preprocessing[itk-elastix]`)
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As of now we do not offer inverse transforms for greedy and elastix. Please resort to ANTs or Niftyreg for this.
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### Atlas Reference
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We provide a range of different atlases, namely:
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We currently provide support for N4 Bias correction based on [SimpleITK](https://simpleitk.org/)
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### Brain extraction
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We currently provide support for [HD-BET](https://github.com/MIC-DKFZ/HD-BET).
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We currently support:
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- [HD-BET](https://github.com/MIC-DKFZ/HD-BET)
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- [SynthStrip](https://surfer.nmr.mgh.harvard.edu/docs/synthstrip/) (Optional dependency, install via: `pip install brainles_preprocessing[synthstrip]`)
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### Defacing
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We currently provide support for [Quickshear](https://github.com/nipy/quickshear).

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