Exclude Test Scripts and Data from PyPI Release (#148)

* move tests to dir and rewrite paths

* add python 3.7 test run support

* add importlib_resources to appveyor

* format files with 79 line length

* run tests from root dir in workflow

* docs: update changelog

---------

Co-authored-by: Arian Jamasb <[email protected]>

Author: Irlirion

.appveyor.yml

@@ -14,7 +14,7 @@ install:
   - conda config --set always_yes yes --set changeps1 no
   - conda update -q conda
   - conda info -a
-  - conda create -q -n test-environment --channel=conda-forge mmtf-python numpy scipy pandas pytest looseversion python=%PYTHON_VERSION%
+  - conda create -q -n test-environment --channel=conda-forge mmtf-python numpy scipy pandas pytest looseversion importlib_resources python=%PYTHON_VERSION%
   - activate test-environment
 
 test_script:

.github/workflows/publish.yaml

@@ -5,50 +5,50 @@ name: Publish BioPandas to PyPI / GitHub
 
 on:
   pull_request:
-    branches: [ main ]
+    branches: [main]
 
 jobs:
   test-style:
     name: Run style tests
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+      - uses: actions/checkout@v3
 
-    - name: Set up Python
-      uses: actions/setup-python@v4
-      with:
-        python-version: '3.x'
-        cache: 'pip'
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
+          cache: "pip"
 
-    - name: Install package dependencies for testing
-      run: pip install .[test]
+      - name: Install package dependencies for testing
+        run: pip install .[test]
 
-    - name: Run all the pytest tests
-      run: flake8 ./biopandas
+      - name: Run all the pytest tests
+        run: flake8 ./biopandas
 
   test-pytest:
     name: Run pytest tests
     runs-on: ubuntu-latest
 
     steps:
-    - uses: actions/checkout@v3
+      - uses: actions/checkout@v3
 
-    - name: Set up Python
-      uses: actions/setup-python@v4
-      with:
-        python-version: '3.x'
-        cache: 'pip'
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: "3.x"
+          cache: "pip"
 
-    - name: Install package dependencies for testing
-      run: pip install .[test]
+      - name: Install package dependencies for testing
+        run: pip install .[test]
 
-    - name: Run all the pytest tests
-      run: pytest ./biopandas -sv
+      - name: Run all the pytest tests
+        run: pytest -sv
 
   build-n-publish:
     needs: [test-pytest] # only runs if tests are passing
-    if: startsWith(github.ref, 'refs/tags/v')  # Check if the tag starts with 'v'
+    if: startsWith(github.ref, 'refs/tags/v') # Check if the tag starts with 'v'
     name: Build and publish to PyPI
     runs-on: ubuntu-latest
 

docs/CHANGELOG.md

@@ -8,6 +8,7 @@ The CHANGELOG for the current development version is available at
 
 - Feature: added method to `PandasMmcif` that allow to select by model ids. PR #[145](https://github.com/BioPandas/biopandas/pull/145))
 - Dev: switched testing framework entirely to pytest. Drops nose dependency due to version conflicts with Python 3.12 (`nose`) and 3.8 (`nose`) PR #[146](https://github.com/BioPandas/biopandas/pull/146))
+-  Avoid inclusion of test scripts and test data in the PyPI release of the Biopandas library. PR #[148](https://github.com/BioPandas/biopandas/pull/148). Addresses issue [#147](https://github.com/BioPandas/biopandas/issues/147)
 
 
 ### 0.5.0dev1 (31/7/2023)