diff --git a/combinations/hash.tsv b/combinations/hash.tsv index ed7bc9aa3..9b44b4304 100644 --- a/combinations/hash.tsv +++ b/combinations/hash.tsv @@ -167,7 +167,6 @@ biopython=1.78,openpyxl=3.0.7,pyfastx=0.8.2,numpy=1.20.2,pandas=1.2.4 python=3.9,biopython=1.78,openpyxl=3.0.7,pandas=1.2.4,rich=10.2.2,typer=0.3.2,xlsxwriter=1.4.3 asciigenome=1.16.0,bedtools=2.30.0 r-recetox-aplcms=0.9.3,r-base=4.1.0,r-arrow=4.0.1 quay.io/bioconda/base-glibc-debian-bash:latest 0 -python=3.9,pandas=1.3.0,seaborn=0.11.0 bwa=0.7.17,samtools=1.9,bcftools=1.9 quay.io/bioconda/base-glibc-debian-bash:latest 0 retropath2_wrapper=2.4.0 quay.io/bioconda/base-glibc-debian-bash:latest 0 star=2.7.9a,samtools=1.13,gawk=5.1.0 @@ -327,7 +326,6 @@ levenshtein=0.20.1 pysam=0.19.1,edlib=1.3.9,tqdm=4.64.0 vcf2maf=1.6.21,ensembl-vep=104.3,python=3.7.12,bcftools=1.10.2 samtools=1.11,pretextmap=0.1.9 -pysam=0.19.1,edlib=1.3.9,tqdm=4.64.0 bbmap=38.98,fastp=0.23.2 bcftools=1.15.1,samtools=1.15.1,python=3.8.3 p7zip=16.02 @@ -477,7 +475,6 @@ perl=5.26.2,r=3.6.0,bcftools=1.13,bedtools=2.30.0,bc=1.07.1,grep,coreutils=9.5 python=3.7.9,pandas=1.3.4,numpy=1.21.4,pyranges=0.0.115,fire=0.4.0 python=3.6.15,matplotlib=3.3.4,numpy=1.19.5,pyvcf=0.6.8,pysam=0.15.4,htslib=1.9 r-base=3.5,bioconductor-htqpcr=1.36.0,bioconductor-rankprod=3.8.0,bioconductor-impute=1.56.0,r-bbmisc=1.11.0,r-psych=1.8.4,r-zoo=1.8_3,bioconductor-normqpcr=1.28.0,r-rgl=0.99.16 -r-base=3.5,bioconductor-htqpcr=1.36.0,bioconductor-rankprod=3.8.0,bioconductor-impute=1.56.0,r-bbmisc=1.11.0,r-psych=1.8.4,r-zoo=1.8_3,bioconductor-normqpcr=1.28.0,r-rgl=0.99.16 umi-transfer=1.0.0 gzip=1.12,tar=1.34,bzip2=1.0.8,unzip=6.0,xz=5.2.6 pbgzip=2016.08.04,bcftools=1.8 @@ -530,7 +527,6 @@ muscle=5.1,pigz=2.8 mafft=7.520,pigz=2.8 gatk4=4.4.0.0,samtools=1.18,coreutils=9.3 mtm-align=20220104,pigz=2.8 -gatk4=4.4.0.0,samtools=1.18,coreutils=9.3 r-base,r-dplyr,r-optparse,r-devtools,r-topicmodels,r-philentropy,r-metrics,r-jsonlite presto=0.7.4,igblast=1.22.0,wget=1.20.1,biopython=1.85 quay.io/bioconda/base-glibc-busybox-bash:2.1.0 0 bioconductor-limma=3.58.1,bioconductor-edger=4.0.2,r-data.table=1.14.10,r-gplots=3.1.3,r-statmod=1.5.0 @@ -823,10 +819,8 @@ r-ggrepel=0.8.0,r-getopt=1.20.2,r-ggplot2=3.1.0,r-dplyr=0.7.8 quay.io/bioconda/b kalign3=3.2.2,kcalign=0.5.8 quay.io/bioconda/base-glibc-busybox-bash:latest 1 gawk=4.1.3,r-base=3.4,macs2=2.1.1.20160309 quay.io/bioconda/base-glibc-busybox-bash:latest 1 r-rjson=0.2.20,bioconductor-diffbind=2.10.0,r-getopt=1.20.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1 -perl=5.26,emboss=5.0.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1 xlsxwriter=1.1.0,pysam=0.15,matplotlib=3.1.2,cyvcf2=0.11.6 quay.io/bioconda/base-glibc-busybox-bash:latest 1 samtools=1.9,kallisto=0.46.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1 -python=3.7,coreutils=8.30 quay.io/bioconda/base-glibc-busybox-bash:latest 1 openbabel=3.1.1,python=3.6 quay.io/bioconda/base-glibc-busybox-bash:latest 1 samtools=1.9,bcbiogff=0.6.4,jbrowse=1.16.11,biopython=1.72,tabix=0.2.6,findutils=4.6.0,python=2.7,pyyaml=3.13 quay.io/bioconda/base-glibc-busybox-bash:latest 1 trinity=2.9.1,kallisto=0.44.0,bioconductor-edger=3.20.7 quay.io/bioconda/base-glibc-busybox-bash:latest 1