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pre-release: cleanup + digest + docs index
- Cleaned dist/ and __pycache__ - Digested 6 raw notes to integrated (raw_count=0) - Created docs/README.md English index for Chinese docs - Fixed test_count canon 264→281 - All 281 tests PASS, 23/23 immune PASS, 0 raw notes Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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‎docs/README.md‎

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# docs/
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Framework documentation for Myco's internal architecture and protocols.
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> **Note:** Most documents are currently in Chinese (Simplified). English translations are in progress. Code, READMEs, and all public-facing files are in English.
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## Contents
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| File | Description |
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|------|-------------|
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| `agent_protocol.md` | Agent runtime contract — tool triggers, write surfaces, anti-patterns |
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| `architecture.md` | Technical architecture overview |
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| `vision.md` | Project vision and positioning |
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| `WORKFLOW.md` | 13 operating principles (W1-W13) |
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| `craft_protocol.md` | Decision-making protocol for architectural changes |
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| `theory.md` | Theoretical foundations |
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| `evolution_engine.md` | Skill self-evolution engine design |
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| `biomimetic_map.md` | Mapping between Myco concepts and fungal biology |
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| `open_problems.md` | Honest registry of unsolved problems |
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| `reusable_system_design.md` | Generalizable architecture patterns |
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| `contract_changelog.md` | Immutable history of contract changes |
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| `operational_narratives.md` | Operational procedure knowledge |
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| `adapters/` | Integration guides for other AI tools |
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| `primordia/` | Craft debate records (architectural decision evidence) |

‎notes/n_20260413T154210_9eef.md‎

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id: n_20260413T154210_9eef
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status: raw
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status: integrated
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source: chat
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tags:
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- on-self-correction
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- agent-orchestration
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- friction-phase2
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created: '2026-04-13T15:42:10'
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last_touched: '2026-04-13T15:42:10'
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digest_count: 0
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last_touched: '2026-04-13T19:16:44'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:44'
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reason: raw → integrated
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---
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# Agent 审计结果必须交叉验证
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‎notes/n_20260413T154224_6263.md‎

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id: n_20260413T154224_6263
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status: raw
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status: integrated
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source: chat
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tags:
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- design-decision
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- immune-system
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- vestigial-organ
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- mechanism
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created: '2026-04-13T15:42:24'
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last_touched: '2026-04-13T15:42:24'
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digest_count: 0
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last_touched: '2026-04-13T19:16:54'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:54'
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reason: raw → integrated
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---
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# vestigial_organ 机制设计决策
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‎notes/n_20260413T154235_1fbf.md‎

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id: n_20260413T154235_1fbf
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status: raw
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status: integrated
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source: chat
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tags:
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- principle
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- immune-system
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- evolution
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- user-feedback
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created: '2026-04-13T15:42:35'
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last_touched: '2026-04-13T15:42:35'
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digest_count: 0
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last_touched: '2026-04-13T19:16:55'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:55'
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reason: raw → integrated
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---
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# 授人以渔原则 — 免疫系统优先于点修复
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‎notes/n_20260413T170709_31a6.md‎

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id: n_20260413T170709_31a6
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status: raw
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status: integrated
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source: chat
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tags:
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- design-decision
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- biomimetic-naming
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- api-breaking
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created: '2026-04-13T17:07:09'
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last_touched: '2026-04-13T17:07:09'
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digest_count: 0
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last_touched: '2026-04-13T19:16:56'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:56'
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reason: raw → integrated
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---
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# 仿生学全命名重构方案
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‎notes/n_20260413T180433_e1e3.md‎

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id: n_20260413T180433_e1e3
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status: raw
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status: integrated
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source: chat
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tags:
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- immune-system-gap
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- mechanism-missing
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- on-self-correction
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created: '2026-04-13T18:04:33'
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last_touched: '2026-04-13T18:04:33'
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digest_count: 0
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last_touched: '2026-04-13T19:16:57'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:57'
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reason: raw → integrated
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---
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# 免疫系统盲区：L12 只扫描 .md
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‎notes/n_20260413T182124_7e76.md‎

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id: n_20260413T182124_7e76
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status: raw
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status: integrated
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source: chat
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tags:
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- on-self-correction
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- mechanism-missing
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- anti-pattern
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- principle
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created: '2026-04-13T18:21:24'
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last_touched: '2026-04-13T18:21:24'
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digest_count: 0
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last_touched: '2026-04-13T19:16:57'
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digest_count: 1
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promote_candidate: false
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excrete_reason: null
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transition_log:
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- from: raw
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to: integrated
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timestamp: '2026-04-13T19:16:57'
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reason: raw → integrated
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---
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# 重复犯错模式清单 — 2026-04-13 session 反思
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