From 661d5187c3f639fb1f0e8a097e2d0b70f07f0949 Mon Sep 17 00:00:00 2001 From: Frank Austin Nothaft Date: Mon, 20 Jun 2016 14:55:43 -0700 Subject: [PATCH] Remove author tags from source files (resolves #310) --- src/toil_scripts/adam_gatk_pipeline/align_and_call.py | 4 +--- src/toil_scripts/adam_pipeline/adam_preprocessing.py | 4 +--- src/toil_scripts/gatk_processing/gatk_preprocessing.py | 4 +--- src/toil_scripts/spark_utils/spawn_cluster.py | 4 +--- 4 files changed, 4 insertions(+), 12 deletions(-) diff --git a/src/toil_scripts/adam_gatk_pipeline/align_and_call.py b/src/toil_scripts/adam_gatk_pipeline/align_and_call.py index 6f7c8d69..cfe3892b 100644 --- a/src/toil_scripts/adam_gatk_pipeline/align_and_call.py +++ b/src/toil_scripts/adam_gatk_pipeline/align_and_call.py @@ -14,10 +14,8 @@ # limitations under the License. # #!/usr/bin/env python2.7 -""" -@author Frank Austin Nothaft fnothaft@berkeley.edu -@date 12/30/2015 +""" Pipeline to go from FASTQ to VCF using both the ADAM+HaplotypeCaller pipeline as well as the GATK best practices pipeline. diff --git a/src/toil_scripts/adam_pipeline/adam_preprocessing.py b/src/toil_scripts/adam_pipeline/adam_preprocessing.py index 1c1e1df9..8fda0517 100644 --- a/src/toil_scripts/adam_pipeline/adam_preprocessing.py +++ b/src/toil_scripts/adam_pipeline/adam_preprocessing.py @@ -14,12 +14,10 @@ # limitations under the License. # #!/usr/bin/env python2.7 + """ UCSC Computational Genomics Lab ADAM/Spark pipeline -@author Audrey Musselman-Brown, almussel@ucsc.edu -@author Frank Austin Nothaft, fnothaft@berkeley.edu - Please see the README.md in the same directory Toil pipeline for ADAM preprocessing diff --git a/src/toil_scripts/gatk_processing/gatk_preprocessing.py b/src/toil_scripts/gatk_processing/gatk_preprocessing.py index b412e2f3..1747de5e 100644 --- a/src/toil_scripts/gatk_processing/gatk_preprocessing.py +++ b/src/toil_scripts/gatk_processing/gatk_preprocessing.py @@ -14,10 +14,8 @@ # limitations under the License. # #!/usr/bin/env python2.7 -""" -@author Jacob Pfeil -@data 01/13/2016 +""" Toil pipeline for processing bam files for GATK halpotype calling 1 = download shared data diff --git a/src/toil_scripts/spark_utils/spawn_cluster.py b/src/toil_scripts/spark_utils/spawn_cluster.py index d7817d11..8ac3a7e3 100644 --- a/src/toil_scripts/spark_utils/spawn_cluster.py +++ b/src/toil_scripts/spark_utils/spawn_cluster.py @@ -13,11 +13,9 @@ # See the License for the specific language governing permissions and # limitations under the License. # + """ Spawns a Spark cluster backed by HDFS. - -@author Audrey Musselman-Brown, almussel@ucsc.edu -@author Frank Austin Nothaft, fnothaft@berkeley.edu """ import logging