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baperry2baperry2
authoredJan 31, 2023
update GNUmake paths (#172)
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v23.11v23.02
1 parent 3a11d9f commit d73709d

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25 files changed

+68
-76
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25 files changed

+68
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‎Exec/Cases/ChallengeProblem/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,11 +1,10 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
66
HYPRE_HOME = /ccs/home/lesclapez/hypre/install-2807
77

8-
98
# AMReX
109
DIM = 3
1110
DEBUG = FALSE

‎Exec/Cases/CounterFlow/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 2

‎Exec/Cases/CounterFlowSpray/GNUmakefile

+6-7
Original file line numberDiff line numberDiff line change
@@ -1,10 +1,9 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
PELEMP_HOME ?= ${TOP}/PeleMP
7-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
6+
PELEMP_HOME ?= ${PELELMEX_HOME}/Submodules/PeleMP
87

98
# AMReX
109
DIM = 2

‎Exec/Cases/DiffBunsen2D/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 2

‎Exec/Cases/JetInCrossflow/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 3

‎Exec/Cases/NormalJet_OpenDomain/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 3

‎Exec/Cases/PremBunsen2D/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 2

‎Exec/Cases/PremBunsen3D/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 3

‎Exec/Cases/SwirlFlowWallInteractions/GNUmakefile

+5-6
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
AMREX_HYDRO_HOME ?= ${TOP}/AMReX-Hydro
6-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
76

87
# AMReX
98
DIM = 3

‎Exec/Cases/TripleFlame/GNUmakefile

+5-5
Original file line numberDiff line numberDiff line change
@@ -1,8 +1,8 @@
1-
TOP = ../../../..
2-
AMREX_HOME ?= ${TOP}/amrex
3-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
4-
PELE_PHYSICS_HOME ?= ${TOP}/PelePhysics
5-
1+
TOP = ../../..
2+
PELELMEX_HOME ?= ${TOP}
3+
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
4+
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
5+
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro
66

77
# AMReX
88
DIM = 2

‎Exec/RegTests/EB_EnclosedFlame/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EB_EnclosedVortex/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EB_FlowPastCylinder/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EB_PipeFlow/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EnclosedFlame/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EnclosedInjection/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/EnclosedInjection/pelelm_prob.cpp

-1
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,5 @@
11
#include <PeleLM.H>
22
#include <AMReX_ParmParse.H>
3-
#include <pmf.H>
43

54
void PeleLM::readProbParm()
65
{

‎Exec/RegTests/FlameSheet/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/HITDecay/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/HotBubble/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/PeriodicCases/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/SprayTest/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/TaylorGreen/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎Exec/RegTests/TurbInflow/GNUmakefile

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
11
TOP = ../../..
2-
PELELMEX_HOME ?= ${TOP}/PeleLMeX
2+
PELELMEX_HOME ?= ${TOP}
33
AMREX_HOME ?= ${PELELMEX_HOME}/Submodules/amrex
44
PELE_PHYSICS_HOME ?= ${PELELMEX_HOME}/Submodules/PelePhysics
55
AMREX_HYDRO_HOME ?= ${PELELMEX_HOME}/Submodules/AMReX-Hydro

‎README.md

+4-2
Original file line numberDiff line numberDiff line change
@@ -41,7 +41,7 @@ You can clone the PeleLMeX and tested versions of its submodules
4141
git clone --recursive https://github.com/AMReX-Combustion/PeleLMeX.git
4242
```
4343

44-
and setup the following environment variables (e.g. using bash):
44+
You can optionally setup the following environment variables (e.g. using bash):
4545

4646
```
4747
export PELELMEX_HOME=<path_to_PeleLMeX>
@@ -50,7 +50,9 @@ export AMREX_HYDRO_HOME=${PELELMEX_HOME}/Submodules/AMReX-Hydro
5050
export PELE_PHYSICS_HOME=${PELELMEX_HOME}/Submodules/PelePhysics
5151
```
5252

53-
Then, move into one of the available example, such as `HotBubble`:
53+
If you do not set these paths as environment variables, they will be assumed as specified in the `GNUmakefile` for the case you are compiling. If compiling in the default location for each case, no modifications are necessary.
54+
55+
Then, move into one of the available examples, such as `HotBubble`:
5456

5557
```
5658
cd PeleLMeX/Exec/RegTest/HotBubble

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